HL_9N72_018

3D structure

PDB id

9N72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State F

Experimental method

ELECTRON MICROSCOPY

Resolution

5.94 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N72_018 not in the Motif Atlas

Homologous match to HL_9PN5_099

Geometric discrepancy: 0.1937

The information below is about HL_9PN5_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9N72|1|L1|A|1084
9N72|1|L1|G|1085
9N72|1|L1|A|1086
9N72|1|L1|A|1087
9N72|1|L1|A|1088
9N72|1|L1|U|1089

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L2

U3 small nucleolar RNA; U3 snoRNA

Chain LW

U3 small nucleolar RNA-associated protein 7

Chain SL

rRNA-processing protein FCF1