9N72 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9N72_001 | GNRA related | ||
| HL_9N72_002 | No text annotation | ||
| HL_9N72_003 | No text annotation | ||
| HL_9N72_004 | No text annotation | ||
| HL_9N72_005 | No text annotation | ||
| HL_9N72_006 | No text annotation | ||
| HL_9N72_007 | No text annotation | ||
| HL_9N72_008 | No text annotation | ||
| HL_9N72_009 | No text annotation | ||
| HL_9N72_010 | No text annotation | ||
| HL_9N72_011 | No text annotation | ||
| HL_9N72_012 | No text annotation | ||
| HL_9N72_013 | No text annotation | ||
| HL_9N72_014 | No text annotation | ||
| HL_9N72_015 | No text annotation | ||
| HL_9N72_016 | No text annotation | ||
| HL_9N72_017 | No text annotation | ||
| HL_9N72_018 | No text annotation | ||
| HL_9N72_019 | No text annotation | ||
| HL_9N72_020 | No text annotation | ||
| HL_9N72_021 | No text annotation | ||
| HL_9N72_022 | No text annotation | ||
| HL_9N72_023 | No text annotation | ||
| HL_9N72_024 | No text annotation | ||
| HL_9N72_025 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9N72_001 | Single bulged G | ||
| IL_9N72_002 | Single bulged C | ||
| IL_9N72_003 | Single bulged A | ||
| IL_9N72_004 | No text annotation | ||
| IL_9N72_005 | No text annotation | ||
| IL_9N72_006 | Tandem non-canonical cWW pairs | ||
| IL_9N72_007 | No text annotation | ||
| IL_9N72_008 | No text annotation | ||
| IL_9N72_009 | No text annotation | ||
| IL_9N72_010 | Isolated cWH basepair | ||
| IL_9N72_011 | No text annotation | ||
| IL_9N72_012 | No text annotation | ||
| IL_9N72_013 | No text annotation | ||
| IL_9N72_014 | Isolated non-canonical cWW pair | ||
| IL_9N72_015 | Single bulged A | ||
| IL_9N72_016 | No text annotation | ||
| IL_9N72_017 | Single bulged U | ||
| IL_9N72_018 | Kink-turn with non-sequential stacking | ||
| IL_9N72_019 | No text annotation | ||
| IL_9N72_020 | Isolated non-canonical cWW pair | ||
| IL_9N72_021 | Isolated non-canonical cWW pair | ||
| IL_9N72_022 | No text annotation | ||
| IL_9N72_023 | Single bulged G | ||
| IL_9N72_024 | Single bulged A | ||
| IL_9N72_025 | No text annotation | ||
| IL_9N72_026 | Tandem non-canonical cWW pairs | ||
| IL_9N72_027 | No text annotation | ||
| IL_9N72_028 | No text annotation | ||
| IL_9N72_029 | Isolated non-canonical cWW pair | ||
| IL_9N72_030 | No text annotation | ||
| IL_9N72_031 | Major groove platform; stack outside cWW | ||
| IL_9N72_032 | Single bulged U | ||
| IL_9N72_033 | Tandem non-canonical cWW pairs | ||
| IL_9N72_034 | Tandem non-canonical cWW pairs | ||
| IL_9N72_035 | Tandem non-canonical cWW pairs | ||
| IL_9N72_036 | No text annotation | ||
| IL_9N72_037 | No text annotation | ||
| IL_9N72_038 | No text annotation | ||
| IL_9N72_039 | No text annotation | ||
| IL_9N72_040 | Tandem non-canonical cWW pairs | ||
| IL_9N72_041 | Single stack bend | ||
| IL_9N72_042 | Single bulged G | ||
| IL_9N72_043 | No text annotation | ||
| IL_9N72_044 | Isolated non-canonical cWW pair | ||
| IL_9N72_045 | Isolated non-canonical cWW pair | ||
| IL_9N72_046 | No text annotation | ||
| IL_9N72_047 | Single bulged U | ||
| IL_9N72_048 | Single bulged A | ||
| IL_9N72_049 | No text annotation | ||
| IL_9N72_050 | No text annotation | ||
| IL_9N72_051 | Isolated non-canonical cWW pair | ||
| IL_9N72_052 | Isolated non-canonical cWW pair | ||
| IL_9N72_053 | No text annotation | ||
| IL_9N72_054 | No text annotation | ||
| IL_9N72_055 | Double sheared | ||
| IL_9N72_056 | Isolated non-canonical cWW pair | ||
| IL_9N72_057 | Tandem non-canonical cWW pairs | ||
| IL_9N72_058 | No text annotation | ||
| IL_9N72_059 | Isolated cWH basepair | ||
| IL_9N72_060 | Isolated cWH basepair | ||
| IL_9N72_061 | No text annotation | ||
| IL_9N72_062 | No text annotation | ||
| IL_9N72_063 | No text annotation | ||
| IL_9N72_064 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9N72_003 | 1/L1/881:884, 1/L1/928:936, 1/L1/943:947 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9N72_005 | 1/L1/1150:1151, 1/L1/1627:1629, 1/L1/1636:1640 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9N72_001 | No text annotation | ||
| J3_9N72_002 | No text annotation | ||
| J3_9N72_004 | No text annotation | ||
| J3_9N72_006 | No text annotation | ||
| J3_9N72_007 | No text annotation | ||
| J3_9N72_008 | No text annotation | ||
| J4_9N72_001 | No text annotation |
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