HL_9N78_017

3D structure

PDB id

9N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State L

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9N78|1|L1|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N78_017 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.0985

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9N78|1|L1|U|764
9N78|1|L1|G|765
9N78|1|L1|U|766
9N78|1|L1|U|767
9N78|1|L1|C|768
9N78|1|L1|A|769
9N78|1|L1|A|770
9N78|1|L1|A|771
9N78|1|L1|G|772

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain L9

40S ribosomal protein S9-A

Chain LF

40S ribosomal protein S24-A