HL_9N78_021

3D structure

PDB id

9N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State L

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

9N78|1|L1|U|1058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N78_021 not in the Motif Atlas

Geometric match to HL_5T83_002

Geometric discrepancy: 0.3321

The information below is about HL_5T83_002

Detailed Annotation

Anticodon loop related

Broad Annotation

Guanidine riboswitch aptamer P2 hairpin

Motif group

HL_81376.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

45

Unit IDs

9N78|1|L1|U|1055
9N78|1|L1|U|1056
9N78|1|L1|U|1057
9N78|1|L1|U|1058
9N78|1|L1|U|1059
9N78|1|L1|U|1060
9N78|1|L1|A|1061
9N78|1|L1|A|1062
9N78|1|L1|U|1063
9N78|1|L1|G|1064

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NM

Small ribosomal subunit protein eS1A

Chain NQ

40S ribosomal protein S27-A