HL_9N79_004

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

9N79|1|L1|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N79_004 not in the Motif Atlas

Geometric match to HL_9H3G_006

Geometric discrepancy: 0.199

The information below is about HL_9H3G_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9N79|1|L1|C|190
9N79|1|L1|C|191
9N79|1|L1|U|192
9N79|1|L1|U|193
9N79|1|L1|U|194
9N79|1|L1|G|195

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L8

40S ribosomal protein S8-A