HL_9N9J_005

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9N9J|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_005 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.1418

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9N9J|1|L5|U|204
9N9J|1|L5|C|205
9N9J|1|L5|U|206
9N9J|1|L5|G|207
9N9J|1|L5|A|208
9N9J|1|L5|U|209
9N9J|1|L5|C|210
9N9J|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain A

Peptidyl-prolyl cis-trans isomerase FKBP11

Chain I

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

Chain LY

Large ribosomal subunit protein uL24

Chain O2

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1