9N9J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9N9J_001 | 1/L5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9N9J_002 | 1/L5/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9N9J_003 | 1/L5/89:95 | No text annotation | homologous HL_9AXU_003 HL_76371.5 | |
| HL_9N9J_005 | 1/L5/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.6 | |
| HL_9N9J_006 | 1/L5/222:226 | No text annotation | geometric HL_8B0X_042 HL_75660.11 | |
| HL_9N9J_007 | 1/L5/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_9N9J_008 | 1/L5/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.5 | |
| HL_9N9J_009 | 1/L5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_9N9J_010 | 1/L5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.7 | |
| HL_9N9J_011 | 1/L5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9N9J_012 | 1/L5/1170:1191 | No text annotation | ||
| HL_9N9J_014 | 1/L5/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9N9J_015 | 1/L5/1364:1373 | No text annotation | ||
| HL_9N9J_016 | 1/L5/1389:1394 | No text annotation | homologous HL_9PN5_016 HL_34789.7 | |
| HL_9N9J_018 | 1/L5/1436:1448 | No text annotation | homologous HL_8GLP_020 HL_20751.3 | |
| HL_9N9J_019 | 1/L5/1480:1484 | No text annotation | homologous HL_8GLP_021 HL_12111.1 | |
| HL_9N9J_020 | 1/L5/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9N9J_021 | 1/L5/1593:1602 | No text annotation | homologous HL_9PN5_020 HL_50204.4 | |
| HL_9N9J_022 | 1/L5/1627:1635 | No text annotation | homologous HL_9PN5_021 HL_28253.2 | |
| HL_9N9J_023 | 1/L5/1675:1680 | No text annotation | homologous HL_9AXU_020 HL_27530.4 | |
| HL_9N9J_025 | 1/L5/1816:1823 | No text annotation | homologous HL_9H3G_030 HL_63894.5 | |
| HL_9N9J_026 | 1/L5/1864:1870 | No text annotation | homologous HL_9PN5_024 HL_34789.7 | |
| HL_9N9J_027 | 1/L5/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9N9J_030 | 1/L5/2317:2322 | No text annotation | homologous HL_9AXU_027 HL_34789.7 | |
| HL_9N9J_031 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.8 | |
| HL_9N9J_032 | 1/L5/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9N9J_033 | 1/L5/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9N9J_035 | 1/L5/2523:2532 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9N9J_037 | 1/L5/2578:2583 | No text annotation | homologous HL_9PN5_035 HL_34789.7 | |
| HL_9N9J_038 | 1/L5/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9N9J_039 | 1/L5/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_9N9J_040 | 1/L5/2704:2712 | No text annotation | ||
| HL_9N9J_041 | 1/L5/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.5 | |
| HL_9N9J_042 | 1/L5/2810:2816 | No text annotation | homologous HL_9PN5_041 HL_34789.7 | |
| HL_9N9J_043 | 1/L5/2872:2877 | No text annotation | homologous HL_9PN5_042 HL_61337.7 | |
| HL_9N9J_044 | 1/L5/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_9N9J_045 | 1/L5/3639:3649 | No text annotation | homologous HL_9PN5_044 HL_87681.4 | |
| HL_9N9J_046 | 1/L5/3668:3674 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_9N9J_047 | 1/L5/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9N9J_049 | 1/L5/3796:3804 | No text annotation | homologous HL_9PN5_048 HL_77449.4 | |
| HL_9N9J_050 | 1/L5/3873:3882 | No text annotation | homologous HL_9PN5_049 HL_78372.4 | |
| HL_9N9J_052 | 1/L5/4193:4201 | No text annotation | homologous HL_9H3G_055 HL_11974.5 | |
| HL_9N9J_053 | 1/L5/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_9N9J_054 | 1/L5/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9N9J_055 | 1/L5/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.5 | |
| HL_9N9J_056 | 1/L5/4301:4309 | No text annotation | homologous HL_8GLP_063 HL_15296.4 | |
| HL_9N9J_057 | 1/L5/4321:4326 | No text annotation | homologous HL_9PN5_057 HL_34789.7 | |
| HL_9N9J_058 | 1/L5/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9N9J_059 | 1/L5/4417:4425 | No text annotation | homologous HL_9PN5_059 HL_52011.4 | |
| HL_9N9J_060 | 1/L5/4474:4481 | No text annotation | homologous HL_9PN5_060 HL_02262.2 | |
| HL_9N9J_061 | 1/L5/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9N9J_062 | 1/L5/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9N9J_063 | 1/L5/4603:4608 | No text annotation | homologous HL_9PN5_063 HL_34789.7 | |
| HL_9N9J_064 | 1/L5/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9N9J_065 | 1/L5/4688:4702 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_9N9J_066 | 1/L5/4907:4914 | No text annotation | homologous HL_8GLP_074 HL_31089.4 | |
| HL_9N9J_067 | 1/L5/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_9N9J_069 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_9N9J_070 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_9N9J_071 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9N9J_072 | 1/L8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_9N9J_073 | 1/L8/68:90 | No text annotation | homologous HL_9H3G_002 NA | |
| HL_9N9J_074 | 1/L8/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.2 | |
| HL_9N9J_076 | 1/u3/13:22 | No text annotation | homologous HL_1N78_001 HL_78347.5 | |
| HL_9N9J_077 | 1/u3/31:39 | No text annotation | homologous HL_7U2J_104 HL_81376.5 | |
| HL_9N9J_078 | 1/u3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5B63_004 HL_33597.8 | |
| HL_9N9J_080 | 1/v3/31:39 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9N9J_004 | No text annotation | ||
| HL_9N9J_013 | No text annotation | ||
| HL_9N9J_017 | No text annotation | ||
| HL_9N9J_024 | No text annotation | ||
| HL_9N9J_028 | No text annotation | ||
| HL_9N9J_029 | No text annotation | ||
| HL_9N9J_034 | No text annotation | ||
| HL_9N9J_036 | No text annotation | ||
| HL_9N9J_048 | No text annotation | ||
| HL_9N9J_051 | No text annotation | ||
| HL_9N9J_068 | No text annotation | ||
| HL_9N9J_075 | No text annotation | ||
| HL_9N9J_079 | tRNA D-loop | ||
| HL_9N9J_081 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9N9J_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.6 | |
| IL_9N9J_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_9N9J_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_9N9J_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.6 | |
| IL_9N9J_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_9N9J_006 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9PN5_005 IL_62879.2 | |
| IL_9N9J_007 | 1/L5/118:122, 1/L5/147:153 | Kink-turn with embedded cWW pair | homologous IL_8GLP_287 IL_65996.1 | |
| IL_9N9J_008 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.6 | |
| IL_9N9J_009 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_9N9J_010 | 1/L5/180:189, 1/L5/252:256 | No text annotation | ||
| IL_9N9J_011 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.6 | |
| IL_9N9J_012 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_9N9J_013 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_9N9J_014 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_9N9J_015 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_9N9J_016 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9N9J_017 | 1/L5/448:450, 1/L5/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_05642.6 | |
| IL_9N9J_018 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | homologous IL_8GLP_024 IL_05642.6 | |
| IL_9N9J_019 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.7 | |
| IL_9N9J_020 | 1/L5/466:472, 1/L5/682:689 | No text annotation | homologous IL_8GLP_026 NA | |
| IL_9N9J_021 | 1/L5/482:485, 1/L5/671:672 | No text annotation | homologous IL_8GLP_027 IL_71421.6 | |
| IL_9N9J_022 | 1/L5/487:488, 1/L5/665:669 | No text annotation | homologous IL_8GLP_028 IL_87975.2 | |
| IL_9N9J_025 | 1/L5/500:505, 1/L5/653:654 | No text annotation | ||
| IL_9N9J_026 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.5 | |
| IL_9N9J_028 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | homologous IL_8GLP_034 IL_28408.5 | |
| IL_9N9J_029 | 1/L5/723:724, 1/L5/942:945 | No text annotation | homologous IL_8GLP_035 IL_09092.2 | |
| IL_9N9J_030 | 1/L5/727:731, 1/L5/938:939 | No text annotation | homologous IL_8GLP_036 IL_75501.2 | |
| IL_9N9J_031 | 1/L5/732:735, 1/L5/928:937 | No text annotation | homologous IL_8GLP_037 NA | |
| IL_9N9J_032 | 1/L5/737:742, 1/L5/922:926 | No text annotation | ||
| IL_9N9J_033 | 1/L5/745:752, 1/L5/911:919 | No text annotation | homologous IL_8GLP_040 IL_25001.3 | |
| IL_9N9J_034 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | homologous IL_8GLP_041 IL_14190.5 | |
| IL_9N9J_035 | 1/L5/1082:1084, 1/L5/1213:1217 | No text annotation | homologous IL_8GLP_043 IL_84227.2 | |
| IL_9N9J_036 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | homologous IL_8GLP_044 IL_05642.6 | |
| IL_9N9J_038 | 1/L5/1094:1096, 1/L5/1199:1201 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.3 | |
| IL_9N9J_039 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G | homologous IL_8GLP_048 IL_28408.5 | |
| IL_9N9J_040 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9N9J_041 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | homologous IL_8GLP_288 NA | |
| IL_9N9J_042 | 1/L5/1360:1361, 1/L5/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_9N9J_043 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9N9J_044 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.5 | |
| IL_9N9J_045 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.5 | |
| IL_9N9J_046 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.6 | |
| IL_9N9J_047 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | homologous IL_8GLP_055 IL_05642.6 | |
| IL_9N9J_048 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_9PN5_026 IL_01003.7 | |
| IL_9N9J_049 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9N9J_050 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_9H3G_035 IL_14190.5 | |
| IL_9N9J_051 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.5 | |
| IL_9N9J_052 | 1/L5/1551:1555, 1/L5/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.5 | |
| IL_9N9J_053 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9N9J_054 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_9AXU_031 IL_97561.8 | |
| IL_9N9J_055 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.4 | |
| IL_9N9J_056 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9N9J_057 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9N9J_058 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8GLP_066 IL_28408.5 | |
| IL_9N9J_059 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_9N9J_060 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_9PN5_038 IL_37129.1 | |
| IL_9N9J_061 | 1/L5/1739:1744, 1/L5/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.4 | |
| IL_9N9J_062 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9N9J_063 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.7 | |
| IL_9N9J_064 | 1/L5/1753:1759, 1/L5/1773:1777 | No text annotation | ||
| IL_9N9J_065 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.5 | |
| IL_9N9J_066 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9N9J_068 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_9AXU_045 IL_08938.4 | |
| IL_9N9J_069 | 1/L5/1911:1918, 1/L5/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.4 | |
| IL_9N9J_070 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.5 | |
| IL_9N9J_071 | 1/L5/1920:1922, 1/L5/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.6 | |
| IL_9N9J_072 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_9N9J_073 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.4 | |
| IL_9N9J_074 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9N9J_075 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_9N9J_078 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | homologous IL_8GLP_083 IL_05642.6 | |
| IL_9N9J_079 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_9H3G_061 IL_84227.2 | |
| IL_9N9J_080 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_9N9J_081 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_9N9J_082 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_9N9J_083 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9H3G_064 IL_02666.4 | |
| IL_9N9J_084 | 1/L5/2415:2419, 1/L5/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.4 | |
| IL_9N9J_085 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_9N9J_086 | 1/L5/2477:2479, 1/L5/2499:2500 | Minor groove platform | homologous IL_8GLP_092 IL_37129.1 | |
| IL_9N9J_087 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | homologous IL_9AXU_061 IL_75527.5 | |
| IL_9N9J_088 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_9N9J_089 | 1/L5/2589:2593, 1/L5/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.5 | |
| IL_9N9J_090 | 1/L5/2598:2602, 1/L5/2737:2747 | No text annotation | ||
| IL_9N9J_091 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged A | homologous IL_8GLP_097 IL_14190.5 | |
| IL_9N9J_092 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.6 | |
| IL_9N9J_093 | 1/L5/2646:2648, 1/L5/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_9N9J_094 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_9N9J_095 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_9N9J_096 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9N9J_097 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_9AXU_071 IL_10432.4 | |
| IL_9N9J_098 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_9PN5_074 IL_74641.5 | |
| IL_9N9J_099 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_9PN5_075 IL_80252.4 | |
| IL_9N9J_100 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_9PN5_076 IL_28217.4 | |
| IL_9N9J_101 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_9PN5_077 IL_20700.4 | |
| IL_9N9J_102 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_9PN5_078 IL_01003.7 | |
| IL_9N9J_103 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_9PN5_079 IL_18824.4 | |
| IL_9N9J_106 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9N9J_107 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_9AXU_079 IL_14684.4 | |
| IL_9N9J_108 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_9PN5_082 IL_55206.4 | |
| IL_9N9J_109 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9N9J_110 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | homologous IL_8GLP_119 IL_15011.6 | |
| IL_9N9J_111 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | ||
| IL_9N9J_112 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_9H3G_097 IL_65359.4 | |
| IL_9N9J_113 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_9E6Q_073 IL_24886.5 | |
| IL_9N9J_114 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_9PN5_087 IL_84014.4 | |
| IL_9N9J_115 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9N9J_116 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_9PN5_089 IL_80025.4 | |
| IL_9N9J_117 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_9PN5_090 IL_97561.8 | |
| IL_9N9J_118 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_9H3G_103 IL_37129.1 | |
| IL_9N9J_119 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9N9J_120 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_9N9J_121 | 1/L5/4091:4129, 1/L5/4155:4158 | No text annotation | ||
| IL_9N9J_122 | 1/L5/4191:4192, 1/L5/4202:4204 | AG tHS outside loop | homologous IL_9PN5_094 IL_14190.5 | |
| IL_9N9J_123 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9N9J_124 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | homologous IL_9AXU_093 IL_14190.5 | |
| IL_9N9J_125 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_9N9J_126 | 1/L5/4347:4350, 1/L5/4364:4365 | No text annotation | homologous IL_9H3G_115 IL_57267.1 | |
| IL_9N9J_127 | 1/L5/4400:4403, 1/L5/4440:4444 | No text annotation | homologous IL_9PN5_098 IL_10004.1 | |
| IL_9N9J_128 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_9PN5_099 IL_46637.5 | |
| IL_9N9J_129 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | homologous IL_9H3G_119 IL_36931.5 | |
| IL_9N9J_130 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8GLP_145 IL_87767.5 | |
| IL_9N9J_131 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | homologous IL_9PN5_102 IL_46637.5 | |
| IL_9N9J_132 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9N9J_133 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_9PN5_104 IL_44609.5 | |
| IL_9N9J_134 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_9AXU_101 IL_01003.7 | |
| IL_9N9J_135 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9N9J_136 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9N9J_137 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_9PN5_108 IL_01003.7 | |
| IL_9N9J_138 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_9H3G_126 IL_14190.5 | |
| IL_9N9J_139 | 1/L5/4580:4582, 1/L5/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_9N9J_140 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9N9J_141 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_9N9J_142 | 1/L5/4596:4603, 1/L5/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9N9J_143 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_9N9J_144 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9N9J_145 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.5 | |
| IL_9N9J_146 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_9N9J_147 | 1/L5/4680:4685, 1/L5/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9N9J_149 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | homologous IL_8GLP_166 IL_15225.5 | |
| IL_9N9J_150 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | homologous IL_8GLP_167 IL_31990.1 | |
| IL_9N9J_151 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | homologous IL_8GLP_168 NA | |
| IL_9N9J_152 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | homologous IL_8GLP_169 IL_71625.6 | |
| IL_9N9J_153 | 1/L5/4885:4889, 1/L5/4930:4934 | No text annotation | homologous IL_8GLP_170 NA | |
| IL_9N9J_154 | 1/L5/4890:4896, 1/L5/4924:4929 | No text annotation | ||
| IL_9N9J_156 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9H3G_140 IL_71194.5 | |
| IL_9N9J_157 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.7 | |
| IL_9N9J_158 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.6 | |
| IL_9N9J_159 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_9N9J_160 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9N9J_161 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged C | homologous IL_9H3G_145 IL_05642.6 | |
| IL_9N9J_162 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared | homologous IL_9H3G_146 IL_58355.5 | |
| IL_9N9J_163 | 1/L7/15:16, 1/L7/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.6 | |
| IL_9N9J_164 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9N9J_165 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_9N9J_166 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9N9J_167 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.2 | |
| IL_9N9J_168 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_9N9J_169 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_9N9J_170 | 1/L8/64:66, 1/L8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9N9J_023 | Tandem non-canonical cWW pairs | ||
| IL_9N9J_024 | No text annotation | ||
| IL_9N9J_027 | No text annotation | ||
| IL_9N9J_037 | Single bulged C | ||
| IL_9N9J_067 | No text annotation | ||
| IL_9N9J_076 | No text annotation | ||
| IL_9N9J_077 | Major groove platform with extra cWW | ||
| IL_9N9J_104 | No text annotation | ||
| IL_9N9J_105 | Single bulged G | ||
| IL_9N9J_148 | No text annotation | ||
| IL_9N9J_155 | Single bulged C | ||
| IL_9N9J_171 | No text annotation | ||
| IL_9N9J_172 | No text annotation | ||
| IL_9N9J_173 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9N9J_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9N9J_002 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | homologous J3_8GLP_023 NA | |
| J3_9N9J_003 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_9PN5_004 J3_07616.4 | |
| J3_9N9J_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_9N9J_005 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | homologous J3_8GLP_027 NA | |
| J3_9N9J_006 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9N9J_007 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_9N9J_008 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9N9J_009 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9N9J_011 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_9AXU_013 J3_05025.4 | |
| J3_9N9J_012 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_9H3G_016 J3_76012.4 | |
| J3_9N9J_013 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_9N9J_014 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_9N9J_015 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_9N9J_016 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_9N9J_017 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9N9J_018 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_9PN5_020 J3_04772.4 | |
| J3_9N9J_019 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_9PN5_021 J3_05327.4 | |
| J3_9N9J_020 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9N9J_021 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | homologous J3_8GLP_036 NA | |
| J3_9N9J_022 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9N9J_023 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_9N9J_024 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J4_9N9J_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_9N9J_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | homologous J4_8GLP_002 NA | |
| J4_9N9J_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | homologous J4_8GLP_003 NA | |
| J4_9N9J_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9N9J_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_9PN5_004 J4_17758.2 | |
| J4_9N9J_006 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9N9J_007 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9N9J_008 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9N9J_009 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_9N9J_010 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9N9J_011 | 1/u3/7:10, 1/u3/25:28, 1/u3/42:49, 1/u3/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J4_9N9J_012 | 1/v3/7:10, 1/v3/25:27, 1/v3/43:52, 1/v3/62:67 | No text annotation | ||
| J5_9N9J_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.4 | |
| J5_9N9J_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_9PN5_002 J5_08384.4 | |
| J5_9N9J_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_9N9J_004 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_9N9J_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.4 | |
| J6_9N9J_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9N9J_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9N9J_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9N9J_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9N9J_010 | No text annotation |
Coloring options: