RNA 3D Hub //

9N9J Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9N9J_0011/L5/37:44No text annotation
HL_9N9J_0021/L5/68:73No text annotation
HL_9N9J_0031/L5/89:95No text annotation
HL_9N9J_0051/L5/204:211No text annotation
HL_9N9J_0061/L5/222:226No text annotation
HL_9N9J_0071/L5/230:238No text annotation
HL_9N9J_0081/L5/289:298No text annotation
HL_9N9J_0091/L5/314:323No text annotation
HL_9N9J_0101/L5/368:373No text annotation
HL_9N9J_0111/L5/393:398No text annotation
HL_9N9J_0121/L5/1170:1191No text annotation
HL_9N9J_0141/L5/1317:1326No text annotation
HL_9N9J_0151/L5/1364:1373No text annotation
HL_9N9J_0161/L5/1389:1394No text annotation
HL_9N9J_0181/L5/1436:1448No text annotation
HL_9N9J_0191/L5/1480:1484No text annotation
HL_9N9J_0201/L5/1561:1566No text annotation
HL_9N9J_0211/L5/1593:1602No text annotation
HL_9N9J_0221/L5/1627:1635No text annotation
HL_9N9J_0231/L5/1675:1680No text annotation
HL_9N9J_0251/L5/1816:1823No text annotation
HL_9N9J_0261/L5/1864:1870No text annotation
HL_9N9J_0271/L5/1886:1893No text annotation
HL_9N9J_0301/L5/2317:2322No text annotation
HL_9N9J_0311/L5/2376:2384No text annotation
HL_9N9J_0321/L5/2420:2426No text annotation
HL_9N9J_0331/L5/2458:2463No text annotation
HL_9N9J_0351/L5/2523:2532No text annotation
HL_9N9J_0371/L5/2578:2583No text annotation
HL_9N9J_0381/L5/2624:2632No text annotation
HL_9N9J_0391/L5/2664:2670No text annotation
HL_9N9J_0401/L5/2704:2712No text annotation
HL_9N9J_0411/L5/2792:2799No text annotation
HL_9N9J_0421/L5/2810:2816No text annotation
HL_9N9J_0431/L5/2872:2877No text annotation
HL_9N9J_0441/L5/3614:3618No text annotation
HL_9N9J_0451/L5/3639:3649No text annotation
HL_9N9J_0461/L5/3668:3674No text annotation
HL_9N9J_0471/L5/3724:3729No text annotation
HL_9N9J_0491/L5/3796:3804No text annotation
HL_9N9J_0501/L5/3873:3882No text annotation
HL_9N9J_0521/L5/4193:4201No text annotation
HL_9N9J_0531/L5/4210:4222No text annotation
HL_9N9J_0541/L5/4250:4258No text annotation
HL_9N9J_0551/L5/4270:4277No text annotation
HL_9N9J_0561/L5/4301:4309No text annotation
HL_9N9J_0571/L5/4321:4326No text annotation
HL_9N9J_0581/L5/4352:4362No text annotation
HL_9N9J_0591/L5/4417:4425No text annotation
HL_9N9J_0601/L5/4474:4481No text annotation
HL_9N9J_0611/L5/4497:4503No text annotation
HL_9N9J_0621/L5/4540:4545No text annotation
HL_9N9J_0631/L5/4603:4608No text annotation
HL_9N9J_0641/L5/4646:4651No text annotation
HL_9N9J_0651/L5/4688:4702No text annotation
HL_9N9J_0661/L5/4907:4914No text annotation
HL_9N9J_0671/L5/4975:4983No text annotation
HL_9N9J_0691/L7/32:45No text annotation
geometric
HL_8QYX_071
HL_01182.1
HL_9N9J_0701/L7/36:41No text annotation
homologous
HL_7A0S_069
HL_59381.2
HL_9N9J_0711/L7/86:91GNRA
homologous
HL_4V9F_072
HL_34789.3
HL_9N9J_0721/L8/47:56No text annotation
HL_9N9J_0731/L8/68:90No text annotation
HL_9N9J_0741/L8/107:112No text annotation
HL_9N9J_0761/u3/13:22No text annotation
homologous
HL_1N78_001
HL_78347.5
HL_9N9J_0771/u3/31:39No text annotation
homologous
HL_7U2J_104
HL_81376.3
HL_9N9J_0781/u3/53:61T-loop with 2 stacked bulged bases
homologous
HL_5B63_004
HL_33597.3
HL_9N9J_0801/v3/31:39tRNA anticodon loop
homologous
HL_9MTS_102
HL_81376.3

Problematic loops

#loop idProblemSequence
HL_9N9J_004No text annotation
HL_9N9J_013No text annotation
HL_9N9J_017No text annotation
HL_9N9J_024No text annotation
HL_9N9J_028No text annotation
HL_9N9J_029No text annotation
HL_9N9J_034No text annotation
HL_9N9J_036No text annotation
HL_9N9J_048No text annotation
HL_9N9J_051No text annotation
HL_9N9J_068No text annotation
HL_9N9J_075No text annotation
HL_9N9J_079tRNA D-loop
HL_9N9J_081No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9N9J_0011/L5/6:7,
1/L8/149:151		No text annotation
IL_9N9J_0021/L5/12:14,
1/L8/143:144		No text annotation
IL_9N9J_0031/L5/16:18,
1/L8/139:141		No text annotation
IL_9N9J_0041/L5/26:27,
1/L5/55:57		No text annotation
IL_9N9J_0051/L5/30:37,
1/L5/44:52		No text annotation
IL_9N9J_0061/L5/81:88,
1/L5/96:102		No text annotation
IL_9N9J_0071/L5/118:122,
1/L5/147:153		No text annotation
IL_9N9J_0081/L5/125:126,
1/L5/142:144		No text annotation
IL_9N9J_0091/L5/169:173,
1/L5/263:266		No text annotation
IL_9N9J_0101/L5/180:189,
1/L5/252:256		No text annotation
IL_9N9J_0111/L5/195:196,
1/L5/244:246		No text annotation
IL_9N9J_0121/L5/199:201,
1/L5/214:215		No text annotation
IL_9N9J_0131/L5/339:342,
1/L8/32:33		No text annotation
IL_9N9J_0141/L5/348:350,
1/L8/25:26		No text annotation
IL_9N9J_0151/L5/415:421,
1/L8/13:19		No text annotation
IL_9N9J_0161/L5/443:446,
1/L5/1300:1304		No text annotation
IL_9N9J_0171/L5/448:450,
1/L5/1297:1298		No text annotation
IL_9N9J_0181/L5/459:460,
1/L5/695:697		No text annotation
IL_9N9J_0191/L5/462:464,
1/L5/691:693		No text annotation
IL_9N9J_0201/L5/466:472,
1/L5/682:689		No text annotation
IL_9N9J_0211/L5/482:485,
1/L5/671:672		No text annotation
IL_9N9J_0221/L5/487:488,
1/L5/665:669		No text annotation
IL_9N9J_0251/L5/500:505,
1/L5/653:654		No text annotation
IL_9N9J_0261/L5/508:510,
1/L5/649:650		No text annotation
IL_9N9J_0281/L5/709:710,
1/L5/1286:1288		No text annotation
IL_9N9J_0291/L5/723:724,
1/L5/942:945		No text annotation
IL_9N9J_0301/L5/727:731,
1/L5/938:939		No text annotation
IL_9N9J_0311/L5/732:735,
1/L5/928:937		No text annotation
IL_9N9J_0321/L5/737:742,
1/L5/922:926		No text annotation
IL_9N9J_0331/L5/745:752,
1/L5/911:919		No text annotation
IL_9N9J_0341/L5/1073:1074,
1/L5/1237:1239		No text annotation
IL_9N9J_0351/L5/1082:1084,
1/L5/1213:1217		No text annotation
IL_9N9J_0361/L5/1086:1087,
1/L5/1209:1211		No text annotation
IL_9N9J_0381/L5/1094:1096,
1/L5/1199:1201		No text annotation
IL_9N9J_0391/L5/1244:1245,
1/L5/1265:1267		No text annotation
IL_9N9J_0401/L5/1357:1360,
1/L5/1379:1382		No text annotation
IL_9N9J_0411/L5/1357:1361,
1/L5/1376:1382		No text annotation
IL_9N9J_0421/L5/1360:1361,
1/L5/1376:1379		No text annotation
IL_9N9J_0431/L5/1425:1429,
1/L5/1455:1460		No text annotation
IL_9N9J_0441/L5/1431:1434,
1/L5/1450:1453		No text annotation
IL_9N9J_0451/L5/1467:1468,
1/L5/1496:1498		No text annotation
IL_9N9J_0461/L5/1474:1476,
1/L5/1489:1490		No text annotation
IL_9N9J_0471/L5/1479:1480,
1/L5/1484:1486		No text annotation
IL_9N9J_0481/L5/1520:1522,
1/L5/1655:1657		No text annotation
IL_9N9J_0491/L5/1522:1526,
1/L5/1648:1655		No text annotation
IL_9N9J_0501/L5/1545:1546,
1/L5/1612:1614		No text annotation
IL_9N9J_0511/L5/1550:1551,
1/L5/1576:1578		No text annotation
IL_9N9J_0521/L5/1551:1555,
1/L5/1572:1576		No text annotation
IL_9N9J_0531/L5/1586:1589,
1/L5/1605:1607		No text annotation
IL_9N9J_0541/L5/1590:1592,
1/L5/1603:1604		No text annotation
IL_9N9J_0551/L5/1624:1626,
1/L5/1636:1640		No text annotation
IL_9N9J_0561/L5/1671:1673,
1/L5/1682:1684		No text annotation
IL_9N9J_0571/L5/1686:1688,
1/L5/1848:1851		No text annotation
IL_9N9J_0581/L5/1723:1725,
1/L5/1838:1839		No text annotation
IL_9N9J_0591/L5/1732:1737,
1/L5/1792:1797		No text annotation
IL_9N9J_0601/L5/1737:1738,
1/L5/1790:1792		No text annotation
IL_9N9J_0611/L5/1739:1744,
1/L5/1786:1789		No text annotation
IL_9N9J_0621/L5/1746:1749,
1/L5/1781:1784		No text annotation
IL_9N9J_0631/L5/1749:1751,
1/L5/1779:1781		No text annotation
IL_9N9J_0641/L5/1753:1759,
1/L5/1773:1777		No text annotation
IL_9N9J_0651/L5/1814:1816,
1/L5/1823:1824		No text annotation
IL_9N9J_0661/L5/1858:1860,
1/L5/1874:1876		No text annotation
IL_9N9J_0681/L5/1905:1909,
1/L5/2067:2071		No text annotation
IL_9N9J_0691/L5/1911:1918,
1/L5/2064:2065		No text annotation
IL_9N9J_0701/L5/1918:1920,
1/L5/2063:2064		No text annotation
IL_9N9J_0711/L5/1920:1922,
1/L5/2062:2063		No text annotation
IL_9N9J_0721/L5/1926:1933,
1/L5/2053:2058		No text annotation
IL_9N9J_0731/L5/1933:1944,
1/L5/2038:2053		No text annotation
IL_9N9J_0741/L5/1946:1948,
1/L5/2035:2036		No text annotation
IL_9N9J_0751/L5/1957:1965,
1/L5/2022:2026		No text annotation
IL_9N9J_0781/L5/2083:2085,
1/L5/2272:2273		No text annotation
IL_9N9J_0791/L5/2290:2292,
1/L5/2342:2345		No text annotation
IL_9N9J_0801/L5/2299:2301,
1/L5/2334:2335		No text annotation
IL_9N9J_0811/L5/2302:2309,
1/L5/2329:2333		No text annotation
IL_9N9J_0821/L5/2312:2314,
1/L5/2325:2326		No text annotation
IL_9N9J_0831/L5/2358:2364,
1/L5/3858:3863		No text annotation
IL_9N9J_0841/L5/2415:2419,
1/L5/2427:2429		No text annotation
IL_9N9J_0851/L5/2446:2450,
1/L5/2509:2514		No text annotation
IL_9N9J_0861/L5/2477:2479,
1/L5/2499:2500		No text annotation
IL_9N9J_0871/L5/2542:2547,
1/L5/2772:2774		No text annotation
IL_9N9J_0881/L5/2549:2550,
1/L5/2768:2770		No text annotation
IL_9N9J_0891/L5/2589:2593,
1/L5/2752:2756		No text annotation
IL_9N9J_0901/L5/2598:2602,
1/L5/2737:2747		No text annotation
IL_9N9J_0911/L5/2613:2614,
1/L5/2724:2726		No text annotation
IL_9N9J_0921/L5/2614:2615,
1/L5/2722:2724		No text annotation
IL_9N9J_0931/L5/2646:2648,
1/L5/2685:2688		No text annotation
IL_9N9J_0941/L5/2651:2653,
1/L5/2681:2682		No text annotation
IL_9N9J_0951/L5/2656:2662,
1/L5/2672:2678		No text annotation
IL_9N9J_0961/L5/2832:2838,
1/L5/3850:3853		No text annotation
IL_9N9J_0971/L5/2844:2846,
1/L5/3842:3844		No text annotation
IL_9N9J_0981/L5/2847:2850,
1/L5/3840:3841		No text annotation
IL_9N9J_0991/L5/2847:2855,
1/L5/3837:3841		No text annotation
IL_9N9J_1001/L5/2850:2855,
1/L5/3837:3840		No text annotation
IL_9N9J_1011/L5/2867:2872,
1/L5/2877:2883		No text annotation
IL_9N9J_1021/L5/2889:2891,
1/L5/3610:3612		No text annotation
IL_9N9J_1031/L5/2896:2897,
1/L5/3602:3605		No text annotation
IL_9N9J_1061/L5/3632:3633,
1/L5/3827:3829		No text annotation
IL_9N9J_1071/L5/3660:3665,
1/L5/3677:3684		No text annotation
IL_9N9J_1081/L5/3700:3703,
1/L5/3749:3750		No text annotation
IL_9N9J_1091/L5/3704:3705,
1/L5/3745:3748		No text annotation
IL_9N9J_1101/L5/3708:3710,
1/L5/3741:3742		No text annotation
IL_9N9J_1111/L5/3710:3714,
1/L5/3739:3741		No text annotation
IL_9N9J_1121/L5/3715:3721,
1/L5/3732:3738		No text annotation
IL_9N9J_1131/L5/3780:3781,
1/L5/3811:3814		No text annotation
IL_9N9J_1141/L5/3781:3792,
1/L5/3808:3811		No text annotation
IL_9N9J_1151/L5/3895:3898,
1/L5/4563:4565		No text annotation
IL_9N9J_1161/L5/3900:3902,
1/L5/4558:4561		No text annotation
IL_9N9J_1171/L5/3913:3915,
1/L5/4388:4389		No text annotation
IL_9N9J_1181/L5/3916:3917,
1/L5/4384:4387		No text annotation
IL_9N9J_1191/L5/3927:3929,
1/L5/4181:4184		No text annotation
IL_9N9J_1201/L5/4082:4088,
1/L5/4161:4164		No text annotation
IL_9N9J_1211/L5/4091:4129,
1/L5/4155:4158		No text annotation
IL_9N9J_1221/L5/4191:4192,
1/L5/4202:4204		No text annotation
IL_9N9J_1231/L5/4243:4245,
1/L5/4263:4267		No text annotation
IL_9N9J_1241/L5/4291:4293,
1/L5/4317:4318		No text annotation
IL_9N9J_1251/L5/4295:4298,
1/L5/4312:4315		No text annotation
IL_9N9J_1261/L5/4347:4350,
1/L5/4364:4365		No text annotation
IL_9N9J_1271/L5/4400:4403,
1/L5/4440:4444		No text annotation
IL_9N9J_1281/L5/4403:4405,
1/L5/4439:4440		No text annotation
IL_9N9J_1291/L5/4405:4407,
1/L5/4435:4439		No text annotation
IL_9N9J_1301/L5/4412:4416,
1/L5/4426:4430		No text annotation
IL_9N9J_1311/L5/4453:4454,
1/L5/4526:4528		No text annotation
IL_9N9J_1321/L5/4456:4458,
1/L5/4520:4524		No text annotation
IL_9N9J_1331/L5/4458:4459,
1/L5/4517:4520		No text annotation
IL_9N9J_1341/L5/4466:4468,
1/L5/4489:4491		No text annotation
IL_9N9J_1351/L5/4466:4470,
1/L5/4485:4491		No text annotation
IL_9N9J_1361/L5/4468:4470,
1/L5/4485:4489		No text annotation
IL_9N9J_1371/L5/4495:4497,
1/L5/4503:4505		No text annotation
IL_9N9J_1381/L5/4537:4538,
1/L5/4547:4549		No text annotation
IL_9N9J_1391/L5/4580:4582,
1/L5/4721:4723		No text annotation
IL_9N9J_1401/L5/4582:4585,
1/L5/4717:4721		No text annotation
IL_9N9J_1411/L5/4590:4592,
1/L5/4618:4620		No text annotation
IL_9N9J_1421/L5/4596:4603,
1/L5/4608:4614		No text annotation
IL_9N9J_1431/L5/4624:4629,
1/L5/4669:4673		No text annotation
IL_9N9J_1441/L5/4632:4637,
1/L5/4662:4666		No text annotation
IL_9N9J_1451/L5/4638:4640,
1/L5/4659:4661		No text annotation
IL_9N9J_1461/L5/4641:4642,
1/L5/4655:4658		No text annotation
IL_9N9J_1471/L5/4680:4685,
1/L5/4705:4710		No text annotation
IL_9N9J_1491/L5/4743:4746,
1/L5/4954:4957		No text annotation
IL_9N9J_1501/L5/4749:4751,
1/L5/4948:4951		No text annotation
IL_9N9J_1511/L5/4756:4765,
1/L5/4869:4877		No text annotation
IL_9N9J_1521/L5/4769:4771,
1/L5/4863:4865		No text annotation
IL_9N9J_1531/L5/4885:4889,
1/L5/4930:4934		No text annotation
IL_9N9J_1541/L5/4890:4896,
1/L5/4924:4929		No text annotation
IL_9N9J_1561/L5/4972:4975,
1/L5/4983:4986		No text annotation
IL_9N9J_1571/L5/4992:4994,
1/L5/5057:5059		No text annotation
IL_9N9J_1581/L5/4996:4997,
1/L5/5053:5055		No text annotation
IL_9N9J_1591/L5/5000:5002,
1/L5/5045:5050		No text annotation
IL_9N9J_1601/L5/5003:5009,
1/L5/5039:5044		No text annotation
IL_9N9J_1611/L5/5012:5014,
1/L5/5035:5036		No text annotation
IL_9N9J_1621/L5/5014:5017,
1/L5/5032:5035		No text annotation
IL_9N9J_1631/L7/15:16,
1/L7/62:64		No text annotation
geometric
IL_8QYX_165
IL_05642.2
IL_9N9J_1641/L7/21:27,
1/L7/52:57		No text annotation
geometric
IL_8QYX_166
IL_41504.1
IL_9N9J_1651/L7/28:29,
1/L7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.2
IL_9N9J_1661/L7/32:36,
1/L7/41:45		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_9N9J_1671/L7/71:78,
1/L7/98:104		No text annotation
geometric
IL_8QYX_169
IL_62167.3
IL_9N9J_1681/L7/79:81,
1/L7/95:97		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.2
IL_9N9J_1691/L7/82:85,
1/L7/92:94		No text annotation
geometric
IL_8QYX_171
IL_01003.3
IL_9N9J_1701/L8/64:66,
1/L8/92:95		No text annotation

Problematic loops

#loop idProblemSequence
IL_9N9J_023No text annotation
IL_9N9J_024No text annotation
IL_9N9J_027No text annotation
IL_9N9J_037No text annotation
IL_9N9J_067No text annotation
IL_9N9J_076No text annotation
IL_9N9J_077No text annotation
IL_9N9J_104No text annotation
IL_9N9J_105No text annotation
IL_9N9J_148No text annotation
IL_9N9J_155No text annotation
IL_9N9J_171No text annotation
IL_9N9J_172No text annotation
IL_9N9J_173No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9N9J_0011/L5/112:116,
1/L5/155:160,
1/L5/275:278		No text annotation
J3_9N9J_0021/L5/196:199,
1/L5/215:228,
1/L5/240:244		No text annotation
J3_9N9J_0031/L5/351:367,
1/L5/374:379,
1/L8/21:24		No text annotation
J3_9N9J_0041/L5/380:390,
1/L5/401:415,
1/L8/19:20		No text annotation
J3_9N9J_0051/L5/451:455,
1/L5/701:705,
1/L5/1292:1296		No text annotation
J3_9N9J_0061/L5/712:713,
1/L5/955:976,
1/L5/1278:1284		No text annotation
J3_9N9J_0071/L5/1531:1537,
1/L5/1622:1624,
1/L5/1640:1643		No text annotation
J3_9N9J_0081/L5/1546:1548,
1/L5/1580:1584,
1/L5/1609:1612		No text annotation
J3_9N9J_0091/L5/1726:1727,
1/L5/1802:1806,
1/L5/1832:1837		No text annotation
J3_9N9J_0111/L5/2393:2399,
1/L5/2805:2807,
1/L5/2819:2822		No text annotation
J3_9N9J_0121/L5/2402:2405,
1/L5/2785:2791,
1/L5/2800:2802		No text annotation
J3_9N9J_0131/L5/2440:2445,
1/L5/2515:2519,
1/L5/2536:2537		No text annotation
J3_9N9J_0141/L5/2451:2456,
1/L5/2465:2476,
1/L5/2501:2508		No text annotation
J3_9N9J_0151/L5/2551:2555,
1/L5/2572:2575,
1/L5/2757:2767		No text annotation
J3_9N9J_0161/L5/2575:2576,
1/L5/2585:2589,
1/L5/2756:2757		No text annotation
J3_9N9J_0171/L5/3937:3939,
1/L5/4074:4078,
1/L5/4168:4173		No text annotation
J3_9N9J_0181/L5/4228:4230,
1/L5/4331:4342,
1/L5/4370:4375		No text annotation
J3_9N9J_0191/L5/4241:4243,
1/L5/4267:4269,
1/L5/4278:4283		No text annotation
J3_9N9J_0201/L5/4463:4466,
1/L5/4491:4493,
1/L5/4507:4513		No text annotation
J3_9N9J_0211/L5/4751:4754,
1/L5/4879:4883,
1/L5/4936:4948		No text annotation
J3_9N9J_0221/L5/4970:4972,
1/L5/4986:4991,
1/L5/5060:5063		No text annotation
J3_9N9J_0231/L7/9:14,
1/L7/65:66,
1/L7/109:110		No text annotation
geometric
J3_8QYX_024
J3_26985.1
J3_9N9J_0241/L8/44:45,
1/L8/58:64,
1/L8/95:99		No text annotation
J4_9N9J_0011/L5/111:112,
1/L5/278:283,
1/L5/304:310,
1/L5/327:330		No text annotation
J4_9N9J_0021/L5/196:199,
1/L5/215:222,
1/L5/226:228,
1/L5/240:244		No text annotation
J4_9N9J_0031/L5/981:983,
1/L5/1070:1072,
1/L5/1240:1243,
1/L5/1268:1273		No text annotation
J4_9N9J_0041/L5/2365:2371,
1/L5/2389:2391,
1/L5/2824:2829,
1/L5/3856:3857		No text annotation
J4_9N9J_0051/L5/2406:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2784		No text annotation
J4_9N9J_0061/L5/2618:2619,
1/L5/2637:2642,
1/L5/2692:2698,
1/L5/2718:2719		No text annotation
J4_9N9J_0071/L5/3634:3638,
1/L5/3650:3654,
1/L5/3690:3694,
1/L5/3821:3826		No text annotation
J4_9N9J_0081/L5/3696:3698,
1/L5/3752:3753,
1/L5/3771:3780,
1/L5/3814:3819		No text annotation
J4_9N9J_0091/L5/4231:4235,
1/L5/4289:4291,
1/L5/4318:4319,
1/L5/4328:4330		No text annotation
J4_9N9J_0101/L5/4587:4590,
1/L5/4620:4621,
1/L5/4676:4678,
1/L5/4712:4715		No text annotation
J4_9N9J_0111/u3/7:10,
1/u3/25:28,
1/u3/42:49,
1/u3/65:66		tRNA junction
homologous
J4_5WWT_001
J4_65285.1
J4_9N9J_0121/v3/7:10,
1/v3/25:27,
1/v3/43:52,
1/v3/62:67		No text annotation
J5_9N9J_0011/L5/19:21,
1/L8/35:42,
1/L8/101:106,
1/L8/113:114,
1/L8/136:138		No text annotation
J5_9N9J_0021/L5/1335:1340,
1/L5/1516:1519,
1/L5/1658:1661,
1/L5/2288:2290,
1/L5/2345:2351		No text annotation
J5_9N9J_0031/L5/2855:2863,
1/L5/2887:2888,
1/L5/3613:3614,
1/L5/3618:3626,
1/L5/3835:3837		No text annotation
J5_9N9J_0041/L5/3902:3910,
1/L5/4392:4400,
1/L5/4444:4453,
1/L5/4528:4534,
1/L5/4552:4558		No text annotation
J5_9N9J_0051/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4228,
1/L5/4375:4381		No text annotation
J6_9N9J_0011/L5/21:26,
1/L5/57:67,
1/L5/74:78,
1/L5/105:109,
1/L5/332:339,
1/L8/33:35		No text annotation
J6_9N9J_0021/L5/1352:1355,
1/L5/1384:1388,
1/L5/1395:1399,
1/L5/1418:1421,
1/L5/1464:1466,
1/L5/1499:1504		No text annotation
J6_9N9J_0031/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4230,
1/L5/4331:4342,
1/L5/4370:4381		No text annotation
J7_9N9J_0011/L5/1666:1671,
1/L5/1684:1685,
1/L5/1852:1855,
1/L5/1879:1884,
1/L5/1895:1899,
1/L5/2077:2078,
1/L5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_9N9J_010No text annotation

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