HL_9N9J_012

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

9N9J|1|L5|C|1172, 9N9J|1|L5|G|1178, 9N9J|1|L5|U|1179, 9N9J|1|L5|C|1181, 9N9J|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|1170
9N9J|1|L5|G|1171
9N9J|1|L5|C|1172
9N9J|1|L5|G|1173
9N9J|1|L5|G|1174
9N9J|1|L5|A|1175
9N9J|1|L5|C|1176
9N9J|1|L5|U|1177
9N9J|1|L5|G|1178
9N9J|1|L5|U|1179
9N9J|1|L5|C|1180
9N9J|1|L5|C|1181
9N9J|1|L5|C|1182
9N9J|1|L5|C|1183
9N9J|1|L5|A|1184
9N9J|1|L5|G|1185
9N9J|1|L5|U|1186
9N9J|1|L5|G|1187
9N9J|1|L5|C|1188
9N9J|1|L5|G|1189
9N9J|1|L5|C|1190
9N9J|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like