HL_9N9J_016

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_016 not in the Motif Atlas

Homologous match to HL_9PN5_016

Geometric discrepancy: 0.0954

The information below is about HL_9PN5_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9N9J|1|L5|U|1389
9N9J|1|L5|G|1390
9N9J|1|L5|A|1391
9N9J|1|L5|A|1392
9N9J|1|L5|G|1393
9N9J|1|L5|G|1394

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

Large ribosomal subunit protein eL18

Chain La

60S ribosomal protein L27a

Chain Li

Large ribosomal subunit protein eL36