HL_9N9J_024

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9N9J|1|L5|C|1763, 9N9J|1|L5|A|1765, 9N9J|1|L5|A|1766, 9N9J|1|L5|A|1767, 9N9J|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|1759
9N9J|1|L5|G|1760
9N9J|1|L5|G|1761
9N9J|1|L5|C|1762
9N9J|1|L5|C|1763
9N9J|1|L5|G|1764
9N9J|1|L5|A|1765
9N9J|1|L5|A|1766
9N9J|1|L5|A|1767
9N9J|1|L5|C|1768
9N9J|1|L5|G|1769
9N9J|1|L5|A|1770
9N9J|1|L5|U|1771
9N9J|1|L5|C|1772
9N9J|1|L5|U|1773

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5

Chain u3

Transfer RNA; tRNA