HL_9N9J_031
3D structure
- PDB id
- 9N9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N9J_031 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.1045
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9N9J|1|L5|A|2376
9N9J|1|L5|C|2377
9N9J|1|L5|G|2378
9N9J|1|L5|A|2379
9N9J|1|L5|G|2380
9N9J|1|L5|A|2381
9N9J|1|L5|A|2382
9N9J|1|L5|C|2383
9N9J|1|L5|U|2384
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain G
- Stress-associated endoplasmic reticulum protein 1
- Chain LP
- Large ribosomal subunit protein uL22
- Chain LR
- Large ribosomal subunit protein eL19
- Chain Ld
- Large ribosomal subunit protein eL31
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