HL_9N9J_034

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUGGCCUCCGUU

Length

13 nucleotides

Bulged bases

9N9J|1|L5|U|2485, 9N9J|1|L5|C|2488, 9N9J|1|L5|C|2489, 9N9J|1|L5|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|2483
9N9J|1|L5|A|2484
9N9J|1|L5|U|2485
9N9J|1|L5|G|2486
9N9J|1|L5|G|2487
9N9J|1|L5|C|2488
9N9J|1|L5|C|2489
9N9J|1|L5|U|2490
9N9J|1|L5|C|2491
9N9J|1|L5|C|2492
9N9J|1|L5|G|2493
9N9J|1|L5|U|2494
9N9J|1|L5|U|2495

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain 7

Translocon-associated protein subunit gamma

Chain L8

5.8S ribosomal RNA; 5.8S rRNA