HL_9N9J_053

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9N9J|1|L5|A|4214, 9N9J|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_053 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.0997

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9N9J|1|L5|U|4210
9N9J|1|L5|C|4211
9N9J|1|L5|A|4212
9N9J|1|L5|A|4213
9N9J|1|L5|A|4214
9N9J|1|L5|C|4215
9N9J|1|L5|G|4216
9N9J|1|L5|G|4217
9N9J|1|L5|U|4218
9N9J|1|L5|A|4219
9N9J|1|L5|A|4220
9N9J|1|L5|C|4221
9N9J|1|L5|G|4222

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

60S ribosomal protein L29