HL_9N9J_080

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCCGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_080 not in the Motif Atlas

Homologous match to HL_9MTS_102

Geometric discrepancy: 0.112

The information below is about HL_9MTS_102

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9N9J|1|v3|A|31
9N9J|1|v3|U|32
9N9J|1|v3|U|33
9N9J|1|v3|C|34
9N9J|1|v3|C|35
9N9J|1|v3|G|36
9N9J|1|v3|A|37
9N9J|1|v3|A|38
9N9J|1|v3|U|39

Current chains

Chain v3

tRNA

Nearby chains