HL_9NDP_001

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGCGGCUAG

Length

10 nucleotides

Bulged bases

9NDP|1|2|C|16, 9NDP|1|2|G|18, 9NDP|1|2|G|19, 9NDP|1|2|C|20, 9NDP|1|2|U|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_001 not in the Motif Atlas

Geometric match to HL_5AXM_001

Geometric discrepancy: 0.2277

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9NDP|1|2|C|13
9NDP|1|2|A|14
9NDP|1|2|G|15
9NDP|1|2|C|16
9NDP|1|2|G|18
9NDP|1|2|G|19
9NDP|1|2|C|20
9NDP|1|2|U|20|||A
9NDP|1|2|A|21
9NDP|1|2|G|22

Current chains

Chain 2

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

Ribosomal protein L11

Chain o

Ribosomal protein L36a