9NDP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9NDP_001 | 1/2/13:22 | tRNA D-loop | geometric HL_5AXM_001 HL_20490.1 | |
| HL_9NDP_002 | 1/2/30:40 | No text annotation | geometric HL_5IB8_208 HL_14063.2 | |
| HL_9NDP_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases | geometric HL_6UGG_006 HL_33597.7 | |
| HL_9NDP_004 | 1/5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.1 | |
| HL_9NDP_005 | 1/5/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.1 | |
| HL_9NDP_006 | 1/5/89:95 | No text annotation | homologous HL_9PN5_003 HL_76371.4 | |
| HL_9NDP_007 | 1/5/131:137 | No text annotation | geometric HL_9BZC_001 HL_89167.4 | |
| HL_9NDP_008 | 1/5/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.5 | |
| HL_9NDP_009 | 1/5/222:226 | No text annotation | geometric HL_8GLP_006 HL_75660.10 | |
| HL_9NDP_010 | 1/5/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.6 | |
| HL_9NDP_011 | 1/5/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.4 | |
| HL_9NDP_012 | 1/5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.4 | |
| HL_9NDP_013 | 1/5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.6 | |
| HL_9NDP_014 | 1/5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.6 | |
| HL_9NDP_018 | 1/5/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.7 | |
| HL_9NDP_019 | 1/5/1364:1373 | No text annotation | ||
| HL_9NDP_020 | 1/5/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.6 | |
| HL_9NDP_022 | 1/5/1479:1486 | UNCG variation | geometric HL_6VMY_004 HL_34080.1 | |
| HL_9NDP_023 | 1/5/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.6 | |
| HL_9NDP_024 | 1/5/1593:1602 | No text annotation | homologous HL_9AXU_018 HL_50204.3 | |
| HL_9NDP_025 | 1/5/1627:1635 | No text annotation | homologous HL_8GLP_024 HL_28253.1 | |
| HL_9NDP_026 | 1/5/1675:1680 | No text annotation | homologous HL_9H3G_028 HL_27530.3 | |
| HL_9NDP_028 | 1/5/1816:1823 | No text annotation | homologous HL_8GLP_027 HL_63894.4 | |
| HL_9NDP_029 | 1/5/1864:1870 | No text annotation | homologous HL_8GLP_028 HL_34789.6 | |
| HL_9NDP_030 | 1/5/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.3 | |
| HL_9NDP_033 | 1/5/2087:2270 | No text annotation | ||
| HL_9NDP_034 | 1/5/2317:2322 | No text annotation | homologous HL_8GLP_032 HL_34789.6 | |
| HL_9NDP_035 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.7 | |
| HL_9NDP_036 | 1/5/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.2 | |
| HL_9NDP_037 | 1/5/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.6 | |
| HL_9NDP_039 | 1/5/2523:2532 | No text annotation | homologous HL_9PN5_034 HL_77449.3 | |
| HL_9NDP_041 | 1/5/2578:2583 | No text annotation | homologous HL_8GLP_040 HL_34789.6 | |
| HL_9NDP_042 | 1/5/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.3 | |
| HL_9NDP_043 | 1/5/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_67772.3 | |
| HL_9NDP_044 | 1/5/2705:2710 | Mini UNCG | geometric HL_6MSF_001 HL_90436.5 | |
| HL_9NDP_045 | 1/5/2738:2742 | No text annotation | homologous HL_8GLP_044 HL_90436.5 | |
| HL_9NDP_046 | 1/5/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.4 | |
| HL_9NDP_047 | 1/5/2810:2816 | No text annotation | homologous HL_9PN5_041 HL_34789.6 | |
| HL_9NDP_048 | 1/5/2872:2877 | No text annotation | homologous HL_9PN5_042 HL_61337.6 | |
| HL_9NDP_049 | 1/5/2901:3598 | No text annotation | ||
| HL_9NDP_050 | 1/5/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_9NDP_051 | 1/5/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.3 | |
| HL_9NDP_052 | 1/5/3668:3674 | No text annotation | homologous HL_9H3G_050 HL_34789.6 | |
| HL_9NDP_053 | 1/5/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.6 | |
| HL_9NDP_054 | 1/5/3757:3767 | No text annotation | homologous HL_9H3G_052 HL_82185.3 | |
| HL_9NDP_055 | 1/5/3796:3804 | No text annotation | homologous HL_8GLP_054 HL_77449.3 | |
| HL_9NDP_056 | 1/5/3873:3882 | No text annotation | homologous HL_9H3G_054 HL_78372.3 | |
| HL_9NDP_058 | 1/5/4193:4201 | LSU P loop | homologous HL_9AXU_050 HL_11974.4 | |
| HL_9NDP_059 | 1/5/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.3 | |
| HL_9NDP_060 | 1/5/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.3 | |
| HL_9NDP_061 | 1/5/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.4 | |
| HL_9NDP_062 | 1/5/4301:4309 | No text annotation | homologous HL_9PN5_056 HL_15296.3 | |
| HL_9NDP_063 | 1/5/4321:4326 | No text annotation | homologous HL_8GLP_064 HL_34789.6 | |
| HL_9NDP_064 | 1/5/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9NDP_065 | 1/5/4417:4425 | No text annotation | homologous HL_9PN5_059 HL_52011.3 | |
| HL_9NDP_066 | 1/5/4474:4481 | No text annotation | homologous HL_8GLP_067 HL_02262.1 | |
| HL_9NDP_067 | 1/5/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.1 | |
| HL_9NDP_068 | 1/5/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.6 | |
| HL_9NDP_069 | 1/5/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.6 | |
| HL_9NDP_070 | 1/5/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.4 | |
| HL_9NDP_071 | 1/5/4688:4702 | No text annotation | homologous HL_9PN5_065 HL_53269.4 | |
| HL_9NDP_073 | 1/5/4906:4915 | No text annotation | ||
| HL_9NDP_074 | 1/5/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.3 | |
| HL_9NDP_075 | 1/5/5021:5028 | No text annotation | homologous HL_9PN5_069 HL_01957.1 | |
| HL_9NDP_076 | 1/7/32:45 | No text annotation | geometric HL_9AXU_068 HL_01182.2 | |
| HL_9NDP_077 | 1/7/36:41 | No text annotation | geometric HL_9AXU_069 HL_59381.4 | |
| HL_9NDP_078 | 1/7/86:91 | No text annotation | geometric HL_8QYX_073 HL_34789.6 | |
| HL_9NDP_079 | 1/8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.3 | |
| HL_9NDP_080 | 1/8/68:90 | No text annotation | ||
| HL_9NDP_081 | 1/8/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.1 | |
| HL_9NDP_082 | 1/8/121:129 | No text annotation | ||
| HL_9NDP_083 | 1/K/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.3 | |
| HL_9NDP_084 | 1/K/69:80 | No text annotation | ||
| HL_9NDP_085 | 1/K/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.6 | |
| HL_9NDP_087 | 1/K/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.3 | |
| HL_9NDP_089 | 1/K/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_9NDP_090 | 1/K/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.6 | |
| HL_9NDP_091 | 1/K/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.3 | |
| HL_9NDP_092 | 1/K/462:467 | No text annotation | homologous HL_9PN5_087 HL_61337.6 | |
| HL_9NDP_093 | 1/K/498:504 | No text annotation | homologous HL_9PN5_088 HL_25795.1 | |
| HL_9NDP_095 | 1/K/569:581 | No text annotation | homologous HL_9PN5_090 HL_68749.3 | |
| HL_9NDP_096 | 1/K/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.6 | |
| HL_9NDP_097 | 1/K/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.4 | |
| HL_9NDP_098 | 1/K/833:841 | No text annotation | geometric HL_8Y0B_001 HL_69752.4 | |
| HL_9NDP_100 | 1/K/957:966 | No text annotation | homologous HL_9PN5_095 HL_38491.4 | |
| HL_9NDP_101 | 1/K/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.6 | |
| HL_9NDP_102 | 1/K/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.4 | |
| HL_9NDP_104 | 1/K/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.6 | |
| HL_9NDP_105 | 1/K/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.6 | |
| HL_9NDP_106 | 1/K/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.3 | |
| HL_9NDP_108 | 1/K/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.6 | |
| HL_9NDP_109 | 1/K/1366:1373 | No text annotation | homologous HL_9H3G_102 HL_63894.4 | |
| HL_9NDP_110 | 1/K/1416:1424 | No text annotation | homologous HL_9H3G_103 HL_33487.2 | |
| HL_9NDP_111 | 1/K/1460:1466 | No text annotation | geometric HL_8GLP_113 HL_76371.4 | |
| HL_9NDP_112 | 1/K/1565:1570 | No text annotation | homologous HL_9PN5_107 HL_34789.6 | |
| HL_9NDP_113 | 1/K/1614:1625 | No text annotation | ||
| HL_9NDP_114 | 1/K/1658:1666 | No text annotation | homologous HL_9H3G_107 HL_25307.2 | |
| HL_9NDP_116 | 1/K/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9NDP_015 | No text annotation | ||
| HL_9NDP_016 | No text annotation | ||
| HL_9NDP_017 | No text annotation | ||
| HL_9NDP_021 | No text annotation | ||
| HL_9NDP_027 | No text annotation | ||
| HL_9NDP_031 | No text annotation | ||
| HL_9NDP_032 | No text annotation | ||
| HL_9NDP_038 | No text annotation | ||
| HL_9NDP_040 | No text annotation | ||
| HL_9NDP_057 | No text annotation | ||
| HL_9NDP_072 | No text annotation | ||
| HL_9NDP_086 | No text annotation | ||
| HL_9NDP_088 | No text annotation | ||
| HL_9NDP_094 | GNRA | ||
| HL_9NDP_099 | No text annotation | ||
| HL_9NDP_103 | No text annotation | ||
| HL_9NDP_107 | No text annotation | ||
| HL_9NDP_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9NDP_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.5 | |
| IL_9NDP_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.7 | |
| IL_9NDP_003 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_01003.6 | |
| IL_9NDP_004 | 1/5/26:27, 1/5/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.5 | |
| IL_9NDP_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.3 | |
| IL_9NDP_006 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.5 | |
| IL_9NDP_007 | 1/5/118:121, 1/5/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_9NDP_008 | 1/5/118:122, 1/5/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_9NDP_009 | 1/5/121:122, 1/5/147:152 | No text annotation | homologous IL_8GLP_008 IL_10396.3 | |
| IL_9NDP_010 | 1/5/125:126, 1/5/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.5 | |
| IL_9NDP_011 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_9NDP_013 | 1/5/182:189, 1/5/252:255 | No text annotation | ||
| IL_9NDP_014 | 1/5/195:196, 1/5/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.5 | |
| IL_9NDP_015 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.7 | |
| IL_9NDP_016 | 1/5/339:342, 1/8/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_41261.1 | |
| IL_9NDP_017 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.4 | |
| IL_9NDP_018 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_9NDP_019 | 1/5/415:421, 1/8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.3 | |
| IL_9NDP_020 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
| IL_9NDP_021 | 1/5/448:450, 1/5/1297:1298 | Single bulged C | geometric IL_8GLP_083 IL_05642.5 | |
| IL_9NDP_022 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1S03_002 IL_05642.5 | |
| IL_9NDP_025 | 1/5/466:472, 1/5/682:689 | No text annotation | homologous IL_8GLP_026 NA | |
| IL_9NDP_026 | 1/5/481:485, 1/5/671:673 | No text annotation | ||
| IL_9NDP_030 | 1/5/508:510, 1/5/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.4 | |
| IL_9NDP_033 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | homologous IL_8GLP_034 IL_28408.4 | |
| IL_9NDP_034 | 1/5/723:724, 1/5/942:945 | No text annotation | geometric IL_8GLP_035 IL_09092.1 | |
| IL_9NDP_035 | 1/5/727:731, 1/5/938:939 | No text annotation | geometric IL_8GLP_036 IL_75501.2 | |
| IL_9NDP_036 | 1/5/732:735, 1/5/928:937 | No text annotation | ||
| IL_9NDP_037 | 1/5/737:739, 1/5/923:926 | No text annotation | geometric IL_8B0X_156 IL_44609.4 | |
| IL_9NDP_038 | 1/5/745:753, 1/5/910:919 | No text annotation | ||
| IL_9NDP_039 | 1/5/980:982, 1/5/1273:1275 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_01003.6 | |
| IL_9NDP_042 | 1/5/1082:1084, 1/5/1213:1217 | No text annotation | geometric IL_8GLP_043 IL_84227.1 | |
| IL_9NDP_043 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_8GLP_044 IL_05642.5 | |
| IL_9NDP_046 | 1/5/1173:1175, 1/5/1186:1188 | Isolated cWH basepair | geometric IL_3R1D_003 IL_10892.4 | |
| IL_9NDP_047 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_9NDP_048 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_9NDP_049 | 1/5/1360:1361, 1/5/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_9NDP_050 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9NDP_051 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.4 | |
| IL_9NDP_052 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.4 | |
| IL_9NDP_053 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.5 | |
| IL_9NDP_054 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_9AXU_025 IL_01003.6 | |
| IL_9NDP_055 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation | homologous IL_8GLP_290 IL_73855.3 | |
| IL_9NDP_056 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.4 | |
| IL_9NDP_057 | 1/5/1551:1555, 1/5/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.4 | |
| IL_9NDP_058 | 1/5/1586:1589, 1/5/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.4 | |
| IL_9NDP_059 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8GLP_061 IL_97561.7 | |
| IL_9NDP_060 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.3 | |
| IL_9NDP_061 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.5 | |
| IL_9NDP_062 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9NDP_063 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_9NDP_064 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8GLP_066 IL_28408.4 | |
| IL_9NDP_065 | 1/5/1732:1737, 1/5/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_9NDP_066 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | homologous IL_9AXU_038 IL_41261.1 | |
| IL_9NDP_067 | 1/5/1739:1744, 1/5/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.3 | |
| IL_9NDP_068 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.4 | |
| IL_9NDP_069 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.6 | |
| IL_9NDP_070 | 1/5/1753:1756, 1/5/1776:1777 | Major groove platform | geometric IL_8DP3_001 IL_15011.5 | |
| IL_9NDP_072 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.4 | |
| IL_9NDP_073 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.6 | |
| IL_9NDP_074 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_9AXU_045 IL_08938.3 | |
| IL_9NDP_075 | 1/5/1911:1918, 1/5/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.3 | |
| IL_9NDP_076 | 1/5/1918:1920, 1/5/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.4 | |
| IL_9NDP_077 | 1/5/1920:1922, 1/5/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.5 | |
| IL_9NDP_078 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.3 | |
| IL_9NDP_079 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.3 | |
| IL_9NDP_080 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.7 | |
| IL_9NDP_083 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged C | homologous IL_8GLP_083 IL_05642.5 | |
| IL_9NDP_084 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.1 | |
| IL_9NDP_085 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.4 | |
| IL_9NDP_086 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.3 | |
| IL_9NDP_087 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.4 | |
| IL_9NDP_088 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.3 | |
| IL_9NDP_089 | 1/5/2415:2419, 1/5/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.3 | |
| IL_9NDP_090 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.3 | |
| IL_9NDP_091 | 1/5/2477:2479, 1/5/2499:2500 | Minor groove platform | homologous IL_8GLP_092 IL_41261.1 | |
| IL_9NDP_092 | 1/5/2542:2547, 1/5/2772:2774 | No text annotation | homologous IL_8GLP_094 NA | |
| IL_9NDP_093 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.7 | |
| IL_9NDP_094 | 1/5/2589:2593, 1/5/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.4 | |
| IL_9NDP_095 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C | homologous IL_9PN5_068 IL_05642.5 | |
| IL_9NDP_096 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.5 | |
| IL_9NDP_097 | 1/5/2646:2648, 1/5/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.4 | |
| IL_9NDP_098 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.4 | |
| IL_9NDP_099 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.3 | |
| IL_9NDP_100 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_9NDP_101 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_9PN5_072 IL_89862.3 | |
| IL_9NDP_102 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_9H3G_084 IL_10432.3 | |
| IL_9NDP_103 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.4 | |
| IL_9NDP_104 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.3 | |
| IL_9NDP_105 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.3 | |
| IL_9NDP_106 | 1/5/2867:2872, 1/5/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.3 | |
| IL_9NDP_107 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.6 | |
| IL_9NDP_108 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8GLP_110 IL_18824.3 | |
| IL_9NDP_109 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.4 | |
| IL_9NDP_110 | 1/5/3660:3665, 1/5/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.3 | |
| IL_9NDP_111 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation | homologous IL_9PN5_082 IL_55206.3 | |
| IL_9NDP_112 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation | homologous IL_8GLP_117 IL_71421.5 | |
| IL_9NDP_113 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend | homologous IL_8GLP_119 IL_15011.5 | |
| IL_9NDP_115 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_9PN5_085 IL_65359.3 | |
| IL_9NDP_116 | 1/5/3780:3781, 1/5/3811:3814 | No text annotation | geometric IL_8OI5_091 IL_24886.4 | |
| IL_9NDP_117 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.3 | |
| IL_9NDP_118 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.4 | |
| IL_9NDP_119 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.3 | |
| IL_9NDP_120 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_8GLP_130 IL_97561.7 | |
| IL_9NDP_121 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_9H3G_103 IL_98469.1 | |
| IL_9NDP_122 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.4 | |
| IL_9NDP_123 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.3 | |
| IL_9NDP_125 | 1/5/4191:4192, 1/5/4202:4204 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.4 | |
| IL_9NDP_126 | 1/5/4243:4245, 1/5/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.3 | |
| IL_9NDP_127 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | homologous IL_9AXU_093 IL_14190.4 | |
| IL_9NDP_128 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.4 | |
| IL_9NDP_129 | 1/5/4347:4350, 1/5/4364:4365 | No text annotation | homologous IL_8GLP_141 IL_57267.1 | |
| IL_9NDP_130 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_9H3G_116 IL_48076.10 | |
| IL_9NDP_131 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.6 | |
| IL_9NDP_132 | 1/5/4403:4405, 1/5/4439:4440 | No text annotation | homologous IL_9H3G_118 IL_46637.4 | |
| IL_9NDP_133 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation | homologous IL_9PN5_100 IL_36931.4 | |
| IL_9NDP_134 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation | homologous IL_9PN5_101 IL_87767.4 | |
| IL_9NDP_135 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation | homologous IL_9AXU_098 IL_46637.4 | |
| IL_9NDP_136 | 1/5/4456:4458, 1/5/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.1 | |
| IL_9NDP_137 | 1/5/4458:4459, 1/5/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.4 | |
| IL_9NDP_138 | 1/5/4466:4468, 1/5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_9AXU_101 IL_01003.6 | |
| IL_9NDP_139 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9NDP_140 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9NDP_141 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.6 | |
| IL_9NDP_142 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.4 | |
| IL_9NDP_143 | 1/5/4580:4582, 1/5/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.4 | |
| IL_9NDP_144 | 1/5/4582:4585, 1/5/4717:4721 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9NDP_145 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_9AXU_108 IL_71625.5 | |
| IL_9NDP_146 | 1/5/4596:4603, 1/5/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.1 | |
| IL_9NDP_147 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.1 | |
| IL_9NDP_148 | 1/5/4632:4637, 1/5/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9NDP_149 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.4 | |
| IL_9NDP_150 | 1/5/4641:4642, 1/5/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.4 | |
| IL_9NDP_151 | 1/5/4680:4685, 1/5/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9NDP_152 | 1/5/4739:4747, 1/5/4953:4960 | No text annotation | ||
| IL_9NDP_153 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | ||
| IL_9NDP_154 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation | ||
| IL_9NDP_155 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.4 | |
| IL_9NDP_156 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation | ||
| IL_9NDP_158 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9H3G_140 IL_71194.4 | |
| IL_9NDP_159 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.6 | |
| IL_9NDP_160 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.5 | |
| IL_9NDP_161 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.3 | |
| IL_9NDP_162 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9NDP_163 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | homologous IL_8GLP_178 IL_05642.5 | |
| IL_9NDP_164 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | geometric IL_8OI5_132 IL_58355.4 | |
| IL_9NDP_165 | 1/7/15:16, 1/7/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.5 | |
| IL_9NDP_166 | 1/7/21:27, 1/7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.2 | |
| IL_9NDP_167 | 1/7/28:29, 1/7/48:51 | No text annotation | geometric IL_8QYX_167 IL_73108.4 | |
| IL_9NDP_168 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_8QYX_168 IL_58103.14 | |
| IL_9NDP_169 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.1 | |
| IL_9NDP_170 | 1/7/79:81, 1/7/95:97 | No text annotation | geometric IL_8QYX_170 IL_01334.1 | |
| IL_9NDP_171 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.6 | |
| IL_9NDP_172 | 1/8/64:66, 1/8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.1 | |
| IL_9NDP_173 | 1/K/23:25, 1/K/649:651 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.6 | |
| IL_9NDP_174 | 1/K/34:36, 1/K/519:521 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.6 | |
| IL_9NDP_175 | 1/K/37:40, 1/K/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.4 | |
| IL_9NDP_176 | 1/K/41:47, 1/K/479:481 | No text annotation | homologous IL_9H3G_158 IL_88082.4 | |
| IL_9NDP_177 | 1/K/49:51, 1/K/476:477 | Minor groove platform | homologous IL_9H3G_159 IL_41261.1 | |
| IL_9NDP_178 | 1/K/57:62, 1/K/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.8 | |
| IL_9NDP_179 | 1/K/63:68, 1/K/81:85 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9NDP_180 | 1/K/108:110, 1/K/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.6 | |
| IL_9NDP_181 | 1/K/110:112, 1/K/349:351 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.3 | |
| IL_9NDP_182 | 1/K/112:115, 1/K/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.5 | |
| IL_9NDP_183 | 1/K/116:121, 1/K/343:347 | No text annotation | homologous IL_9PN5_151 IL_31545.3 | |
| IL_9NDP_184 | 1/K/130:144, 1/K/175:182 | No text annotation | ||
| IL_9NDP_185 | 1/K/145:151, 1/K/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9NDP_186 | 1/K/152:155, 1/K/163:166 | No text annotation | homologous IL_9H3G_166 IL_37443.2 | |
| IL_9NDP_188 | 1/K/216:219, 1/K/302:309 | No text annotation | ||
| IL_9NDP_189 | 1/K/223:288, 1/K/295:298 | No text annotation | ||
| IL_9NDP_190 | 1/K/312:314, 1/K/336:337 | Single bulged A | homologous IL_9PN5_156 IL_14190.4 | |
| IL_9NDP_191 | 1/K/317:320, 1/K/331:333 | No text annotation | homologous IL_9PN5_157 IL_15698.7 | |
| IL_9NDP_192 | 1/K/359:364, 1/K/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.6 | |
| IL_9NDP_193 | 1/K/366:371, 1/K/393:394 | No text annotation | geometric IL_8GLP_211 IL_01372.3 | |
| IL_9NDP_194 | 1/K/411:413, 1/K/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.3 | |
| IL_9NDP_195 | 1/K/437:439, 1/K/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.4 | |
| IL_9NDP_196 | 1/K/459:461, 1/K/468:470 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_01003.6 | |
| IL_9NDP_197 | 1/K/487:489, 1/K/511:512 | Single bulged U | homologous IL_9H3G_178 IL_97561.7 | |
| IL_9NDP_198 | 1/K/491:495, 1/K/508:509 | No text annotation | homologous IL_9PN5_165 IL_26900.3 | |
| IL_9NDP_199 | 1/K/495:496, 1/K/506:508 | Single bulged G | homologous IL_9PN5_166 IL_28408.4 | |
| IL_9NDP_202 | 1/K/563:565, 1/K/585:592 | No text annotation | homologous IL_9PN5_168 IL_02511.3 | |
| IL_9NDP_203 | 1/K/566:569, 1/K/581:584 | Tandem non-canonical cWW pairs | geometric IL_8GLP_220 IL_71194.4 | |
| IL_9NDP_204 | 1/K/599:608, 1/K/635:637 | No text annotation | ||
| IL_9NDP_205 | 1/K/611:617, 1/K/624:632 | Kink-turn related | homologous IL_9H3G_187 IL_52042.3 | |
| IL_9NDP_206 | 1/K/663:665, 1/K/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_01003.6 | |
| IL_9NDP_207 | 1/K/665:671, 1/K/1161:1162 | No text annotation | homologous IL_9PN5_174 IL_20847.3 | |
| IL_9NDP_208 | 1/K/673:675, 1/K/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.6 | |
| IL_9NDP_209 | 1/K/676:680, 1/K/1025:1029 | No text annotation | homologous IL_9PN5_176 IL_05821.3 | |
| IL_9NDP_213 | 1/K/802:803, 1/K/860:863 | No text annotation | homologous IL_9H3G_192 IL_73108.4 | |
| IL_9NDP_214 | 1/K/805:807, 1/K/856:858 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.5 | |
| IL_9NDP_215 | 1/K/807:815, 1/K/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.4 | |
| IL_9NDP_216 | 1/K/874:876, 1/K/910:912 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.6 | |
| IL_9NDP_217 | 1/K/877:879, 1/K/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_9NDP_218 | 1/K/922:923, 1/K/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.4 | |
| IL_9NDP_219 | 1/K/925:926, 1/K/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.7 | |
| IL_9NDP_220 | 1/K/928:931, 1/K/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.4 | |
| IL_9NDP_221 | 1/K/931:935, 1/K/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.4 | |
| IL_9NDP_222 | 1/K/943:945, 1/K/981:983 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_01003.6 | |
| IL_9NDP_223 | 1/K/952:956, 1/K/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9NDP_224 | 1/K/1042:1047, 1/K/1071:1073 | No text annotation | homologous IL_9H3G_203 IL_31690.1 | |
| IL_9NDP_225 | 1/K/1047:1051, 1/K/1067:1071 | No text annotation | homologous IL_9PN5_190 IL_05821.3 | |
| IL_9NDP_226 | 1/K/1091:1093, 1/K/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.4 | |
| IL_9NDP_227 | 1/K/1098:1101, 1/K/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.4 | |
| IL_9NDP_228 | 1/K/1101:1103, 1/K/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.4 | |
| IL_9NDP_229 | 1/K/1108:1110, 1/K/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_41261.1 | |
| IL_9NDP_230 | 1/K/1168:1175, 1/K/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.3 | |
| IL_9NDP_231 | 1/K/1203:1204, 1/K/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.4 | |
| IL_9NDP_232 | 1/K/1206:1208, 1/K/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.4 | |
| IL_9NDP_233 | 1/K/1214:1217, 1/K/1681:1685 | No text annotation | homologous IL_9H3G_212 IL_63596.14 | |
| IL_9NDP_234 | 1/K/1230:1232, 1/K/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.6 | |
| IL_9NDP_235 | 1/K/1235:1236, 1/K/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_98469.1 | |
| IL_9NDP_236 | 1/K/1270:1272, 1/K/1510:1512 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.6 | |
| IL_9NDP_239 | 1/K/1325:1327, 1/K/1502:1503 | Single bulged U | homologous IL_9PN5_203 IL_97561.7 | |
| IL_9NDP_240 | 1/K/1329:1333, 1/K/1498:1500 | No text annotation | geometric IL_9PN5_204 IL_82453.3 | |
| IL_9NDP_241 | 1/K/1329:1335, 1/K/1492:1500 | No text annotation | ||
| IL_9NDP_242 | 1/K/1333:1335, 1/K/1492:1498 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9NDP_243 | 1/K/1337:1338, 1/K/1488:1490 | Single bulged A | homologous IL_9H3G_222 IL_14190.4 | |
| IL_9NDP_244 | 1/K/1347:1349, 1/K/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.4 | |
| IL_9NDP_245 | 1/K/1363:1365, 1/K/1374:1375 | Minor groove platform | geometric IL_8CRE_457 IL_41261.1 | |
| IL_9NDP_246 | 1/K/1395:1399, 1/K/1447:1450 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_9NDP_247 | 1/K/1402:1405, 1/K/1441:1444 | No text annotation | homologous IL_9H3G_226 IL_78800.4 | |
| IL_9NDP_248 | 1/K/1412:1413, 1/K/1427:1429 | No text annotation | homologous IL_9PN5_214 IL_71421.5 | |
| IL_9NDP_249 | 1/K/1537:1539, 1/K/1594:1596 | Isolated non-canonical cWW pair | geometric IL_9AXU_007 IL_01003.6 | |
| IL_9NDP_250 | 1/K/1541:1550, 1/K/1582:1592 | No text annotation | ||
| IL_9NDP_251 | 1/K/1550:1558, 1/K/1577:1582 | No text annotation | ||
| IL_9NDP_252 | 1/K/1560:1562, 1/K/1573:1575 | No text annotation | homologous IL_9H3G_231 IL_01334.1 | |
| IL_9NDP_253 | 1/K/1604:1610, 1/K/1629:1635 | No text annotation | ||
| IL_9NDP_254 | 1/K/1700:1702, 1/K/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.3 | |
| IL_9NDP_255 | 1/K/1702:1705, 1/K/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.4 | |
| IL_9NDP_256 | 1/K/1706:1708, 1/K/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.6 | |
| IL_9NDP_257 | 1/K/1708:1711, 1/K/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9NDP_258 | 1/K/1714:1716, 1/K/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.6 | |
| IL_9NDP_259 | 1/K/1717:1720, 1/K/1813:1816 | Double sheared | homologous IL_9H3G_238 IL_58355.4 | |
| IL_9NDP_260 | 1/K/1720:1722, 1/K/1812:1813 | Single bulged U | homologous IL_9PN5_226 IL_97561.7 | |
| IL_9NDP_261 | 1/K/1729:1731, 1/K/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9NDP_262 | 1/K/1733:1736, 1/K/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.4 | |
| IL_9NDP_263 | 1/K/1739:1741, 1/K/1793:1795 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.6 | |
| IL_9NDP_264 | 1/K/1742:1746, 1/K/1788:1792 | No text annotation | homologous IL_9H3G_243 IL_15190.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9NDP_012 | Single stack bend | ||
| IL_9NDP_023 | Single stack bend | ||
| IL_9NDP_024 | No text annotation | ||
| IL_9NDP_027 | Multiple bulged bases | ||
| IL_9NDP_028 | Single bulged U | ||
| IL_9NDP_029 | Single bulged C | ||
| IL_9NDP_031 | Single stack bend | ||
| IL_9NDP_032 | No text annotation | ||
| IL_9NDP_040 | Single stack bend | ||
| IL_9NDP_041 | No text annotation | ||
| IL_9NDP_044 | Single stack bend | ||
| IL_9NDP_045 | No text annotation | ||
| IL_9NDP_071 | Single stack bend | ||
| IL_9NDP_081 | Kink-turn | ||
| IL_9NDP_082 | Isolated non-canonical cWW pair | ||
| IL_9NDP_114 | No text annotation | ||
| IL_9NDP_124 | No text annotation | ||
| IL_9NDP_157 | No text annotation | ||
| IL_9NDP_187 | Double sheared with non-canonical cWW | ||
| IL_9NDP_200 | Single bulged A | ||
| IL_9NDP_201 | No text annotation | ||
| IL_9NDP_210 | Tandem non-canonical cWW pairs | ||
| IL_9NDP_211 | Stack and bulge | ||
| IL_9NDP_212 | No text annotation | ||
| IL_9NDP_237 | No text annotation | ||
| IL_9NDP_238 | Tandem non-canonical cWW pairs | ||
| IL_9NDP_265 | No text annotation | ||
| IL_9NDP_266 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9NDP_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9NDP_002 | 1/5/196:199, 1/5/215:228, 1/5/240:244 | No text annotation | ||
| J3_9NDP_003 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.3 | |
| J3_9NDP_004 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.3 | |
| J3_9NDP_005 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.3 | |
| J3_9NDP_006 | 1/5/451:455, 1/5/701:705, 1/5/1292:1296 | No text annotation | homologous J3_8GLP_027 NA | |
| J3_9NDP_007 | 1/5/982:984, 1/5/1070:1075, 1/5/1236:1273 | No text annotation | ||
| J3_9NDP_008 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_9PN5_008 J3_46658.3 | |
| J3_9NDP_009 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | ||
| J3_9NDP_010 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9NDP_012 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_9AXU_013 J3_05025.3 | |
| J3_9NDP_013 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8GLP_005 J3_76012.3 | |
| J3_9NDP_014 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.3 | |
| J3_9NDP_015 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
| J3_9NDP_016 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_9H3G_020 J3_08594.3 | |
| J3_9NDP_017 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9NDP_018 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | homologous J3_8GLP_008 NA | |
| J3_9NDP_019 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.3 | |
| J3_9NDP_020 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_9AXU_022 J3_05327.3 | |
| J3_9NDP_021 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_9PN5_022 J3_44047.3 | |
| J3_9NDP_022 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_9NDP_023 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | homologous J3_8GLP_037 NA | |
| J3_9NDP_024 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.3 | |
| J3_9NDP_025 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.3 | |
| J3_9NDP_026 | 1/K/40:41, 1/K/481:487, 1/K/512:514 | No text annotation | homologous J3_9H3G_028 J3_58657.3 | |
| J3_9NDP_027 | 1/K/682:684, 1/K/918:922, 1/K/1022:1023 | No text annotation | geometric J3_9PN5_030 J3_01633.3 | |
| J3_9NDP_028 | 1/K/682:684, 1/K/918:923, 1/K/1019:1023 | No text annotation | homologous J3_9PN5_031 J3_17385.7 | |
| J3_9NDP_029 | 1/K/816:819, 1/K/829:831, 1/K/843:848 | No text annotation | homologous J3_9H3G_032 J3_97642.4 | |
| J3_9NDP_030 | 1/K/938:941, 1/K/985:993, 1/K/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9NDP_031 | 1/K/1094:1096, 1/K/1136:1140, 1/K/1147:1151 | No text annotation | ||
| J3_9NDP_032 | 1/K/1218:1221, 1/K/1645:1651, 1/K/1673:1680 | No text annotation | homologous J3_9H3G_035 J3_85722.3 | |
| J3_9NDP_033 | 1/K/1225:1228, 1/K/1530:1532, 1/K/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.3 | |
| J3_9NDP_034 | 1/K/1237:1244, 1/K/1255:1266, 1/K/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.3 | |
| J3_9NDP_035 | 1/K/1272:1277, 1/K/1320:1324, 1/K/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9NDP_036 | 1/K/1340:1345, 1/K/1384:1389, 1/K/1481:1486 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9NDP_037 | 1/K/1350:1351, 1/K/1360:1363, 1/K/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.6 | |
| J3_9NDP_038 | 1/K/1391:1395, 1/K/1450:1456, 1/K/1470:1479 | No text annotation | ||
| J3_9NDP_039 | 1/K/1532:1536, 1/K/1597:1604, 1/K/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.3 | |
| J4_9NDP_001 | 1/2/7:10, 1/2/25:27, 1/2/43:51, 1/2/63:66 | No text annotation | ||
| J4_9NDP_002 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.3 | |
| J4_9NDP_003 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_9NDP_004 | 1/5/712:713, 1/5/955:961, 1/5/971:980, 1/5/1275:1284 | No text annotation | ||
| J4_9NDP_005 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9NDP_006 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_9PN5_004 J4_17758.1 | |
| J4_9NDP_007 | 1/5/2551:2555, 1/5/2572:2576, 1/5/2585:2589, 1/5/2756:2767 | No text annotation | ||
| J4_9NDP_008 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9NDP_009 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_9PN5_006 J4_78485.3 | |
| J4_9NDP_010 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3780, 1/5/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.1 | |
| J4_9NDP_011 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_9NDP_012 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9NDP_013 | 1/K/98:106, 1/K/355:357, 1/K/405:409, 1/K/431:432 | No text annotation | homologous J4_9PN5_010 J4_15241.4 | |
| J4_9NDP_014 | 1/K/671:673, 1/K/1032:1037, 1/K/1078:1089, 1/K/1160:1161 | No text annotation | homologous J4_9H3G_014 J4_14595.3 | |
| J5_9NDP_001 | 1/5/20:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:137 | No text annotation | ||
| J5_9NDP_002 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8GLP_002 J5_08384.3 | |
| J5_9NDP_003 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.3 | |
| J5_9NDP_004 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_9NDP_005 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.3 | |
| J5_9NDP_006 | 1/K/30:34, 1/K/521:527, 1/K/558:563, 1/K/592:595, 1/K/641:644 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9NDP_007 | 1/K/30:34, 1/K/521:527, 1/K/558:565, 1/K/585:595, 1/K/641:644 | No text annotation | ||
| J5_9NDP_008 | 1/K/53:56, 1/K/89:96, 1/K/434:436, 1/K/457:459, 1/K/470:474 | No text annotation | homologous J5_9PN5_009 J5_58574.3 | |
| J5_9NDP_009 | 1/K/123:129, 1/K/183:185, 1/K/214:215, 1/K/310:312, 1/K/337:341 | No text annotation | ||
| J5_9NDP_010 | 1/K/685:690, 1/K/736:744, 1/K/797:800, 1/K/865:874, 1/K/912:917 | No text annotation | ||
| J6_9NDP_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_9NDP_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9NDP_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_9NDP_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9NDP_011 | No text annotation |
Coloring options: