HL_9NDP_020

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_020 not in the Motif Atlas

Homologous match to HL_8GLP_018

Geometric discrepancy: 0.0847

The information below is about HL_8GLP_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9NDP|1|5|U|1389
9NDP|1|5|G|1390
9NDP|1|5|A|1391
9NDP|1|5|A|1392
9NDP|1|5|G|1393
9NDP|1|5|G|1394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

Ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36