HL_9NDP_030
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NDP_030 not in the Motif Atlas
- Homologous match to HL_8GLP_029
- Geometric discrepancy: 0.1369
- The information below is about HL_8GLP_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9NDP|1|5|G|1886
9NDP|1|5|G|1887
9NDP|1|5|A|1888
9NDP|1|5|U|1889
9NDP|1|5|G|1890
9NDP|1|5|A|1891
9NDP|1|5|A|1892
9NDP|1|5|C|1893
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL30
- Chain e
- 60S ribosomal protein L32
- Chain f
- eL33
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