HL_9NDP_042

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9NDP|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_042 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.1806

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9NDP|1|5|G|2624
9NDP|1|5|U|2625
9NDP|1|5|U|2626
9NDP|1|5|C|2627
9NDP|1|5|U|2628
9NDP|1|5|C|2629
9NDP|1|5|U|2630
9NDP|1|5|U|2631
9NDP|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain EF

Isoform 2 of Transcription factor BTF3

Chain R

Ribosomal protein L19

Chain U

eL22