HL_9NDP_047

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9NDP|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_047 not in the Motif Atlas

Homologous match to HL_9PN5_041

Geometric discrepancy: 0.165

The information below is about HL_9PN5_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9NDP|1|5|U|2810
9NDP|1|5|G|2811
9NDP|1|5|A|2812
9NDP|1|5|A|2813
9NDP|1|5|C|2814
9NDP|1|5|A|2815
9NDP|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19