HL_9NDP_051

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9NDP|1|5|A|3642, 9NDP|1|5|A|3643, 9NDP|1|5|U|3644, 9NDP|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|U|3639
9NDP|1|5|U|3640
9NDP|1|5|U|3641
9NDP|1|5|A|3642
9NDP|1|5|A|3643
9NDP|1|5|U|3644
9NDP|1|5|U|3645
9NDP|1|5|A|3646
9NDP|1|5|A|3647
9NDP|1|5|A|3648
9NDP|1|5|A|3649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain NB

Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form

Chain j

Ribosomal protein L37