HL_9NDP_055

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9NDP|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_055 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0824

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NDP|1|5|U|3796
9NDP|1|5|C|3797
9NDP|1|5|U|3798
9NDP|1|5|A|3799
9NDP|1|5|A|3800
9NDP|1|5|U|3801
9NDP|1|5|U|3802
9NDP|1|5|A|3803
9NDP|1|5|G|3804

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain V

Ribosomal protein L23