HL_9NDP_056

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9NDP|1|5|A|3876, 9NDP|1|5|A|3877, 9NDP|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_056 not in the Motif Atlas

Homologous match to HL_9H3G_054

Geometric discrepancy: 0.1015

The information below is about HL_9H3G_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9NDP|1|5|G|3873
9NDP|1|5|G|3874
9NDP|1|5|G|3875
9NDP|1|5|A|3876
9NDP|1|5|A|3877
9NDP|1|5|C|3878
9NDP|1|5|G|3879
9NDP|1|5|G|3880
9NDP|1|5|G|3881
9NDP|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain e

60S ribosomal protein L32