HL_9NDP_086

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_086 not in the Motif Atlas

Geometric match to HL_8B0X_025

Geometric discrepancy: 0.2535

The information below is about HL_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9NDP|1|K|U|197
9NDP|1|K|U|198
9NDP|1|K|C|199
9NDP|1|K|G|200
9NDP|1|K|C|201
9NDP|1|K|G|202

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8