HL_9NDP_094

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9NDP|1|K|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_094 not in the Motif Atlas

Geometric match to HL_5M0I_002

Geometric discrepancy: 0.2015

The information below is about HL_5M0I_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9NDP|1|K|C|539
9NDP|1|K|U|540
9NDP|1|K|U|541
9NDP|1|K|U|542
9NDP|1|K|C|543
9NDP|1|K|G|544

Current chains

Chain K

18S rRNA

Nearby chains