HL_9NDP_099

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

9NDP|1|K|U|887, 9NDP|1|K|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|885
9NDP|1|K|A|886
9NDP|1|K|U|887
9NDP|1|K|U|888
9NDP|1|K|U|889
9NDP|1|K|U|890
9NDP|1|K|G|891
9NDP|1|K|U|892
9NDP|1|K|U|893
9NDP|1|K|G|894
9NDP|1|K|G|895
9NDP|1|K|U|896
9NDP|1|K|U|897
9NDP|1|K|U|898
9NDP|1|K|U|899
9NDP|1|K|C|900
9NDP|1|K|G|901

Current chains

Chain K

18S rRNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain z

40S ribosomal protein S6