HL_9NDP_107

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9NDP|1|K|U|1300, 9NDP|1|K|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_107 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.4143

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NDP|1|K|A|1295
9NDP|1|K|U|1296
9NDP|1|K|U|1297
9NDP|1|K|G|1298
9NDP|1|K|A|1299
9NDP|1|K|U|1300
9NDP|1|K|A|1301
9NDP|1|K|G|1302
9NDP|1|K|C|1303
9NDP|1|K|U|1304

Current chains

Chain K

18S rRNA

Nearby chains

Chain 0

Ribosomal protein S27a

Chain 9

eS29

Chain WW

uS19