HL_9NJF_010

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9NJF|1|R1|G|329, 9NJF|1|R1|A|330, 9NJF|1|R1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1027

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9NJF|1|R1|G|327
9NJF|1|R1|U|328
9NJF|1|R1|G|329
9NJF|1|R1|A|330
9NJF|1|R1|C|331
9NJF|1|R1|A|332
9NJF|1|R1|G|333
9NJF|1|R1|C|334
9NJF|1|R1|C|335

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4