3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUGCUAACGU
Length
10 nucleotides
Bulged bases
9NJF|1|R1|U|958, 9NJF|1|R1|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NJF_025 not in the Motif Atlas
Geometric match to HL_7QR8_003
Geometric discrepancy: 0.2036
The information below is about HL_7QR8_003
Detailed Annotation
GNRA with extra cWH
Broad Annotation
GNRA with extra cWH
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

9NJF|1|R1|G|954
9NJF|1|R1|U|955
9NJF|1|R1|G|956
9NJF|1|R1|C|957
9NJF|1|R1|U|958
9NJF|1|R1|A|959
9NJF|1|R1|A|960
9NJF|1|R1|C|961
9NJF|1|R1|G|962
9NJF|1|R1|U|963

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain R2
5S ribosomal RNA; 5S rRNA

Coloring options:


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