HL_9NJF_048

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9NJF|1|R1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0962

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9NJF|1|R1|G|1949
9NJF|1|R1|G|1950
9NJF|1|R1|U|1951
9NJF|1|R1|A|1952
9NJF|1|R1|A|1953
9NJF|1|R1|G|1954
9NJF|1|R1|U|1955
9NJF|1|R1|U|1956
9NJF|1|R1|C|1957

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

Large ribosomal subunit protein uL14

Chain R3

Small subunit ribosomal RNA; SSU rRNA