HL_9NJF_053

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9NJF|1|R1|A|2268, 9NJF|1|R1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0818

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9NJF|1|R1|C|2264
9NJF|1|R1|U|2265
9NJF|1|R1|A|2266
9NJF|1|R1|A|2267
9NJF|1|R1|A|2268
9NJF|1|R1|G|2269
9NJF|1|R1|A|2270
9NJF|1|R1|G|2271
9NJF|1|R1|U|2272
9NJF|1|R1|A|2273
9NJF|1|R1|A|2274
9NJF|1|R1|C|2275
9NJF|1|R1|G|2276

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

50S ribosomal protein L27