HL_9NJF_057

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_057 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1183

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NJF|1|R1|C|2374
9NJF|1|R1|G|2375
9NJF|1|R1|A|2376
9NJF|1|R1|A|2377
9NJF|1|R1|A|2378
9NJF|1|R1|G|2379

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 33

Large ribosomal subunit protein bL33