HL_9NJF_075

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

9NJF|1|R3|U|208, 9NJF|1|R3|U|209, 9NJF|1|R3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_075 not in the Motif Atlas

Geometric match to HL_7Z4O_002

Geometric discrepancy: 0.3949

The information below is about HL_7Z4O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9NJF|1|R3|C|206
9NJF|1|R3|C|207
9NJF|1|R3|U|208
9NJF|1|R3|U|209
9NJF|1|R3|C|210
9NJF|1|R3|G|211
9NJF|1|R3|G|212
9NJF|1|R3|G|213

Current chains

Chain R3

16S ribosomal RNA

Nearby chains