HL_9NJF_085

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_085 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.0951

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9NJF|1|R3|C|689
9NJF|1|R3|G|690
9NJF|1|R3|G|691
9NJF|1|R3|U|692
9NJF|1|R3|G|693
9NJF|1|R3|A|694
9NJF|1|R3|A|695
9NJF|1|R3|A|696
9NJF|1|R3|U|697
9NJF|1|R3|G|698

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sg

30S ribosomal protein S7

Chain sk

Small ribosomal subunit protein uS11