HL_9NJF_091

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9NJF|1|R3|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_091 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1862

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|G|963
9NJF|1|R3|A|964
9NJF|1|R3|U|965
9NJF|1|R3|G|966
9NJF|1|R3|C|967
9NJF|1|R3|A|968
9NJF|1|R3|A|969
9NJF|1|R3|C|970
9NJF|1|R3|G|971
9NJF|1|R3|C|972

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10

Chain sm

30S ribosomal protein S13

Chain sn

Small ribosomal subunit protein uS14