HL_9NJF_098

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

9NJF|1|R3|C|1267, 9NJF|1|R3|G|1268, 9NJF|1|R3|A|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_098 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2006

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9NJF|1|R3|C|1265
9NJF|1|R3|G|1266
9NJF|1|R3|C|1267
9NJF|1|R3|G|1268
9NJF|1|R3|A|1269
9NJF|1|R3|G|1270

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 31

Large ribosomal subunit protein bL31

Chain sm

30S ribosomal protein S13