HL_9NJF_099
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- 9NJF|1|R3|C|1317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NJF_099 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.2356
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9NJF|1|R3|C|1314
9NJF|1|R3|U|1315
9NJF|1|R3|G|1316
9NJF|1|R3|C|1317
9NJF|1|R3|A|1318
9NJF|1|R3|A|1319
9NJF|1|R3|C|1320
9NJF|1|R3|U|1321
9NJF|1|R3|C|1322
9NJF|1|R3|G|1323
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain 31
- Large ribosomal subunit protein bL31
- Chain sm
- 30S ribosomal protein S13
- Chain sn
- Small ribosomal subunit protein uS14
- Chain ss
- 30S ribosomal protein S19
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