3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUUCGAUCC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NJF_105 not in the Motif Atlas
Homologous match to HL_4V90_034
Geometric discrepancy: 0.1718
The information below is about HL_4V90_034
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

9NJF|1|T|G|53
9NJF|1|T|U|54
9NJF|1|T|U|55
9NJF|1|T|C|56
9NJF|1|T|G|57
9NJF|1|T|A|58
9NJF|1|T|U|59
9NJF|1|T|C|60
9NJF|1|T|C|61

Current chains

Chain T
tRNA

Nearby chains

Chain 5
50S ribosomal protein L5
Chain Y
Probable ATP-binding protein YbiT

Coloring options:


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