HL_9NJF_105
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NJF_105 not in the Motif Atlas
- Homologous match to HL_4V90_034
- Geometric discrepancy: 0.1718
- The information below is about HL_4V90_034
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9NJF|1|T|G|53
9NJF|1|T|U|54
9NJF|1|T|U|55
9NJF|1|T|C|56
9NJF|1|T|G|57
9NJF|1|T|A|58
9NJF|1|T|U|59
9NJF|1|T|C|60
9NJF|1|T|C|61
Current chains
- Chain T
- tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L5
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: