HL_9NJV_019

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_019 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.124

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NJV|1|R1|G|712
9NJV|1|R1|G|713
9NJV|1|R1|U|714
9NJV|1|R1|A|715
9NJV|1|R1|A|716
9NJV|1|R1|C|717
9NJV|1|R1|A|718
9NJV|1|R1|C|719

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain so

Small ribosomal subunit protein uS15