9NJV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_9NJV_001 | 1/R1/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
HL_9NJV_002 | 1/R1/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
HL_9NJV_003 | 1/R1/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
HL_9NJV_004 | 1/R1/153:172 | No text annotation | ||
HL_9NJV_005 | 1/R1/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
HL_9NJV_006 | 1/R1/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
HL_9NJV_007 | 1/R1/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
HL_9NJV_008 | 1/R1/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
HL_9NJV_009 | 1/R1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_9NJV_010 | 1/R1/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
HL_9NJV_011 | 1/R1/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
HL_9NJV_012 | 1/R1/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
HL_9NJV_013 | 1/R1/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
HL_9NJV_014 | 1/R1/544:549 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
HL_9NJV_015 | 1/R1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
HL_9NJV_016 | 1/R1/611:617 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_9NJV_017 | 1/R1/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
HL_9NJV_018 | 1/R1/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
HL_9NJV_019 | 1/R1/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
HL_9NJV_020 | 1/R1/744:753 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
HL_9NJV_021 | 1/R1/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
HL_9NJV_022 | 1/R1/826:831 | No text annotation | homologous HL_9DFE_023 HL_55195.3 | |
HL_9NJV_023 | 1/R1/875:902 | No text annotation | ||
HL_9NJV_024 | 1/R1/954:963 | GNRA with extra tWH | geometric HL_7QR8_003 HL_04259.3 | |
HL_9NJV_025 | 1/R1/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
HL_9NJV_026 | 1/R1/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
HL_9NJV_027 | 1/R1/1171:1176 | No text annotation | homologous HL_4WF9_030 NA | |
HL_9NJV_028 | 1/R1/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
HL_9NJV_029 | 1/R1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
HL_9NJV_030 | 1/R1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
HL_9NJV_031 | 1/R1/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
HL_9NJV_032 | 1/R1/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
HL_9NJV_033 | 1/R1/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
HL_9NJV_034 | 1/R1/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
HL_9NJV_035 | 1/R1/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
HL_9NJV_036 | 1/R1/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
HL_9NJV_037 | 1/R1/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
HL_9NJV_038 | 1/R1/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
HL_9NJV_039 | 1/R1/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
HL_9NJV_040 | 1/R1/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
HL_9NJV_041 | 1/R1/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
HL_9NJV_042 | 1/R1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
HL_9NJV_043 | 1/R1/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
HL_9NJV_044 | 1/R1/1868:1873 | No text annotation | ||
HL_9NJV_045 | 1/R1/1910:1920 | No text annotation | ||
HL_9NJV_046 | 1/R1/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
HL_9NJV_047 | 1/R1/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
HL_9NJV_048 | 1/R1/2129:2159 | No text annotation | ||
HL_9NJV_049 | 1/R1/2209:2215 | No text annotation | homologous HL_4WF9_048 HL_49922.4 | |
HL_9NJV_050 | 1/R1/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
HL_9NJV_051 | 1/R1/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
HL_9NJV_052 | 1/R1/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
HL_9NJV_053 | 1/R1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
HL_9NJV_054 | 1/R1/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
HL_9NJV_055 | 1/R1/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
HL_9NJV_056 | 1/R1/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
HL_9NJV_057 | 1/R1/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
HL_9NJV_058 | 1/R1/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
HL_9NJV_059 | 1/R1/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
HL_9NJV_060 | 1/R1/2594:2599 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
HL_9NJV_061 | 1/R1/2658:2663 | GNRA | homologous HL_9DFE_062 HL_37824.7 | |
HL_9NJV_062 | 1/R1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
HL_9NJV_063 | 1/R1/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
HL_9NJV_064 | 1/R1/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
HL_9NJV_065 | 1/R1/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_9NJV_066 | 1/R1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
HL_9NJV_067 | 1/R2/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
HL_9NJV_068 | 1/R2/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
HL_9NJV_069 | 1/R3/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_9NJV_070 | 1/R3/75:95 | No text annotation | ||
HL_9NJV_071 | 1/R3/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
HL_9NJV_072 | 1/R3/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
HL_9NJV_073 | 1/R3/200:217 | No text annotation | ||
HL_9NJV_074 | 1/R3/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
HL_9NJV_075 | 1/R3/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
HL_9NJV_076 | 1/R3/319:334 | No text annotation | ||
HL_9NJV_077 | 1/R3/342:347 | UNCG | homologous HL_6CZR_080 NA | |
HL_9NJV_078 | 1/R3/377:386 | No text annotation | ||
HL_9NJV_079 | 1/R3/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_9NJV_080 | 1/R3/457:475 | No text annotation | ||
HL_9NJV_081 | 1/R3/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
HL_9NJV_082 | 1/R3/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
HL_9NJV_083 | 1/R3/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
HL_9NJV_084 | 1/R3/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
HL_9NJV_085 | 1/R3/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
HL_9NJV_086 | 1/R3/840:846 | No text annotation | ||
HL_9NJV_087 | 1/R3/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
HL_9NJV_088 | 1/R3/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
HL_9NJV_089 | 1/R3/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_9NJV_090 | 1/R3/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
HL_9NJV_091 | 1/R3/1027:1034 | No text annotation | ||
HL_9NJV_092 | 1/R3/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
HL_9NJV_093 | 1/R3/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_9NJV_094 | 1/R3/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_9NJV_095 | 1/R3/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
HL_9NJV_096 | 1/R3/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
HL_9NJV_097 | 1/R3/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_9NJV_098 | 1/R3/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_9NJV_099 | 1/R3/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_9NJV_100 | 1/R3/1515:1520 | GNRA | homologous HL_5J7L_031 HL_37824.7 | |
HL_9NJV_101 | 1/T/12:22 | tRNA D-loop | homologous HL_7MRL_001 HL_20811.4 | |
HL_9NJV_102 | 1/T/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.6 | |
HL_9NJV_103 | 1/T/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3WQY_003 HL_28252.8 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_9NJV_001 | 1/R1/2:4, 1/R1/2900:2901 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
IL_9NJV_002 | 1/R1/4:5, 1/R1/2898:2900 | No text annotation | geometric IL_8CRE_075 IL_90729.1 | |
IL_9NJV_004 | 1/R1/24:30, 1/R1/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
IL_9NJV_005 | 1/R1/36:37, 1/R1/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
IL_9NJV_006 | 1/R1/43:44, 1/R1/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
IL_9NJV_007 | 1/R1/81:85, 1/R1/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
IL_9NJV_008 | 1/R1/183:184, 1/R1/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
IL_9NJV_009 | 1/R1/188:194, 1/R1/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
IL_9NJV_010 | 1/R1/239:245, 1/R1/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_1NBS_007 IL_26307.2 | |
IL_9NJV_011 | 1/R1/269:271, 1/R1/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
IL_9NJV_012 | 1/R1/273:282, 1/R1/358:364 | No text annotation | ||
IL_9NJV_013 | 1/R1/293:295, 1/R1/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
IL_9NJV_014 | 1/R1/536:539, 1/R1/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
IL_9NJV_015 | 1/R1/564:566, 1/R1/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_07785.1 | |
IL_9NJV_016 | 1/R1/606:610, 1/R1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
IL_9NJV_017 | 1/R1/672:674, 1/R1/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
IL_9NJV_018 | 1/R1/674:678, 1/R1/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
IL_9NJV_019 | 1/R1/697:698, 1/R1/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.6 | |
IL_9NJV_020 | 1/R1/702:703, 1/R1/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
IL_9NJV_021 | 1/R1/703:707, 1/R1/724:728 | Triple sheared | homologous IL_4WF9_024 IL_50730.2 | |
IL_9NJV_022 | 1/R1/738:740, 1/R1/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
IL_9NJV_023 | 1/R1/775:777, 1/R1/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
IL_9NJV_024 | 1/R1/844:847, 1/R1/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
IL_9NJV_025 | 1/R1/844:848, 1/R1/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
IL_9NJV_026 | 1/R1/847:848, 1/R1/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
IL_9NJV_027 | 1/R1/850:851, 1/R1/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
IL_9NJV_028 | 1/R1/856:862, 1/R1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
IL_9NJV_029 | 1/R1/862:863, 1/R1/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
IL_9NJV_030 | 1/R1/864:868, 1/R1/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
IL_9NJV_031 | 1/R1/870:872, 1/R1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
IL_9NJV_032 | 1/R1/994:996, 1/R1/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
IL_9NJV_033 | 1/R1/998:1002, 1/R1/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
IL_9NJV_034 | 1/R1/1004:1011, 1/R1/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
IL_9NJV_035 | 1/R1/1011:1013, 1/R1/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
IL_9NJV_036 | 1/R1/1018:1024, 1/R1/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
IL_9NJV_037 | 1/R1/1024:1030, 1/R1/1124:1140 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
IL_9NJV_038 | 1/R1/1031:1034, 1/R1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_9NJV_039 | 1/R1/1038:1041, 1/R1/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
IL_9NJV_040 | 1/R1/1043:1053, 1/R1/1106:1112 | No text annotation | ||
IL_9NJV_041 | 1/R1/1055:1090, 1/R1/1101:1104 | No text annotation | ||
IL_9NJV_042 | 1/R1/1169:1171, 1/R1/1176:1180 | No text annotation | homologous IL_4WF9_043 NA | |
IL_9NJV_043 | 1/R1/1196:1198, 1/R1/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
IL_9NJV_044 | 1/R1/1202:1206, 1/R1/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
IL_9NJV_045 | 1/R1/1208:1215, 1/R1/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
IL_9NJV_046 | 1/R1/1262:1269, 1/R1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
IL_9NJV_047 | 1/R1/1319:1323, 1/R1/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
IL_9NJV_048 | 1/R1/1351:1353, 1/R1/1379:1380 | Single stack bend | geometric IL_6FZ0_001 IL_90729.1 | |
IL_9NJV_049 | 1/R1/1351:1355, 1/R1/1376:1380 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
IL_9NJV_050 | 1/R1/1353:1355, 1/R1/1376:1379 | No text annotation | ||
IL_9NJV_051 | 1/R1/1357:1361, 1/R1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
IL_9NJV_052 | 1/R1/1415:1416, 1/R1/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
IL_9NJV_053 | 1/R1/1417:1421, 1/R1/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_9NJV_054 | 1/R1/1432:1435, 1/R1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
IL_9NJV_055 | 1/R1/1437:1440, 1/R1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
IL_9NJV_056 | 1/R1/1450:1451, 1/R1/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
IL_9NJV_057 | 1/R1/1468:1471, 1/R1/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
IL_9NJV_058 | 1/R1/1474:1478, 1/R1/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
IL_9NJV_059 | 1/R1/1481:1482, 1/R1/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
IL_9NJV_060 | 1/R1/1489:1491, 1/R1/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
IL_9NJV_061 | 1/R1/1526:1529, 1/R1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
IL_9NJV_062 | 1/R1/1651:1656, 1/R1/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
IL_9NJV_063 | 1/R1/1663:1665, 1/R1/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
IL_9NJV_064 | 1/R1/1666:1669, 1/R1/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
IL_9NJV_065 | 1/R1/1666:1674, 1/R1/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_22854.4 | |
IL_9NJV_066 | 1/R1/1669:1674, 1/R1/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
IL_9NJV_067 | 1/R1/1686:1691, 1/R1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
IL_9NJV_068 | 1/R1/1712:1718, 1/R1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
IL_9NJV_069 | 1/R1/1720:1724, 1/R1/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
IL_9NJV_070 | 1/R1/1770:1771, 1/R1/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
IL_9NJV_071 | 1/R1/1798:1804, 1/R1/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
IL_9NJV_072 | 1/R1/1837:1840, 1/R1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
IL_9NJV_073 | 1/R1/1841:1842, 1/R1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
IL_9NJV_074 | 1/R1/1846:1849, 1/R1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
IL_9NJV_075 | 1/R1/1851:1860, 1/R1/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
IL_9NJV_076 | 1/R1/1864:1867, 1/R1/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
IL_9NJV_077 | 1/R1/1933:1934, 1/R1/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
IL_9NJV_078 | 1/R1/1934:1945, 1/R1/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
IL_9NJV_079 | 1/R1/2050:2052, 1/R1/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
IL_9NJV_080 | 1/R1/2054:2056, 1/R1/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
IL_9NJV_081 | 1/R1/2067:2069, 1/R1/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
IL_9NJV_082 | 1/R1/2070:2071, 1/R1/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
IL_9NJV_083 | 1/R1/2081:2083, 1/R1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
IL_9NJV_084 | 1/R1/2085:2087, 1/R1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
IL_9NJV_086 | 1/R1/2103:2105, 1/R1/2184:2186 | Isolated tWW contact | geometric IL_7MLW_006 IL_10167.6 | |
IL_9NJV_087 | 1/R1/2108:2115, 1/R1/2165:2181 | No text annotation | ||
IL_9NJV_088 | 1/R1/2108:2127, 1/R1/2161:2181 | No text annotation | ||
IL_9NJV_089 | 1/R1/2115:2127, 1/R1/2161:2165 | No text annotation | ||
IL_9NJV_090 | 1/R1/2202:2204, 1/R1/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
IL_9NJV_091 | 1/R1/2350:2353, 1/R1/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
IL_9NJV_092 | 1/R1/2401:2403, 1/R1/2414:2415 | Single bulged U | geometric IL_5LYS_008 IL_89505.4 | |
IL_9NJV_093 | 1/R1/2454:2455, 1/R1/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
IL_9NJV_094 | 1/R1/2456:2459, 1/R1/2493:2495 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
IL_9NJV_095 | 1/R1/2459:2461, 1/R1/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_51387.2 | |
IL_9NJV_096 | 1/R1/2466:2470, 1/R1/2480:2484 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
IL_9NJV_097 | 1/R1/2507:2509, 1/R1/2579:2582 | Major groove platform with extra pair | geometric IL_4AOB_003 IL_15698.3 | |
IL_9NJV_098 | 1/R1/2510:2512, 1/R1/2574:2578 | No text annotation | homologous IL_9DFE_097 IL_07785.1 | |
IL_9NJV_099 | 1/R1/2512:2515, 1/R1/2569:2574 | No text annotation | ||
IL_9NJV_100 | 1/R1/2522:2523, 1/R1/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
IL_9NJV_101 | 1/R1/2591:2592, 1/R1/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
IL_9NJV_102 | 1/R1/2636:2640, 1/R1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
IL_9NJV_103 | 1/R1/2651:2658, 1/R1/2663:2669 | No text annotation | geometric IL_8OI5_139 IL_04346.10 | |
IL_9NJV_104 | 1/R1/2680:2684, 1/R1/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
IL_9NJV_105 | 1/R1/2687:2691, 1/R1/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
IL_9NJV_106 | 1/R1/2695:2696, 1/R1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
IL_9NJV_107 | 1/R1/2737:2742, 1/R1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
IL_9NJV_108 | 1/R1/2806:2811, 1/R1/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
IL_9NJV_109 | 1/R1/2838:2839, 1/R1/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
IL_9NJV_110 | 1/R1/2843:2846, 1/R1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
IL_9NJV_111 | 1/R1/2847:2852, 1/R1/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
IL_9NJV_113 | 1/R2/17:18, 1/R2/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
IL_9NJV_114 | 1/R2/22:28, 1/R2/56:61 | No text annotation | ||
IL_9NJV_115 | 1/R2/30:31, 1/R2/51:54 | No text annotation | homologous IL_9DFE_112 IL_68140.4 | |
IL_9NJV_116 | 1/R2/71:79, 1/R2/97:105 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_56455.6 | |
IL_9NJV_117 | 1/R3/30:33, 1/R3/551:553 | Isolated cWH basepair | geometric IL_3R1E_001 IL_10167.6 | |
IL_9NJV_119 | 1/R3/44:45, 1/R3/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
IL_9NJV_120 | 1/R3/47:52, 1/R3/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
IL_9NJV_121 | 1/R3/54:56, 1/R3/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_9NJV_122 | 1/R3/63:66, 1/R3/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
IL_9NJV_123 | 1/R3/67:69, 1/R3/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
IL_9NJV_124 | 1/R3/70:73, 1/R3/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
IL_9NJV_125 | 1/R3/128:132, 1/R3/230:233 | No text annotation | ||
IL_9NJV_126 | 1/R3/132:136, 1/R3/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
IL_9NJV_127 | 1/R3/144:146, 1/R3/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
IL_9NJV_128 | 1/R3/147:153, 1/R3/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_9NJV_129 | 1/R3/242:247, 1/R3/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
IL_9NJV_130 | 1/R3/249:253, 1/R3/273:275 | No text annotation | ||
IL_9NJV_131 | 1/R3/292:293, 1/R3/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
IL_9NJV_132 | 1/R3/367:369, 1/R3/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
IL_9NJV_133 | 1/R3/371:375, 1/R3/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
IL_9NJV_134 | 1/R3/375:376, 1/R3/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
IL_9NJV_135 | 1/R3/409:416, 1/R3/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
IL_9NJV_136 | 1/R3/440:442, 1/R3/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
IL_9NJV_137 | 1/R3/446:450, 1/R3/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
IL_9NJV_138 | 1/R3/450:455, 1/R3/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
IL_9NJV_139 | 1/R3/504:511, 1/R3/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_9NJV_140 | 1/R3/515:521, 1/R3/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
IL_9NJV_141 | 1/R3/569:575, 1/R3/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
IL_9NJV_142 | 1/R3/580:584, 1/R3/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
IL_9NJV_143 | 1/R3/594:596, 1/R3/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
IL_9NJV_144 | 1/R3/597:598, 1/R3/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
IL_9NJV_145 | 1/R3/605:612, 1/R3/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
IL_9NJV_146 | 1/R3/654:655, 1/R3/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
IL_9NJV_147 | 1/R3/659:660, 1/R3/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
IL_9NJV_148 | 1/R3/662:666, 1/R3/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_9NJV_149 | 1/R3/673:677, 1/R3/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
IL_9NJV_150 | 1/R3/684:688, 1/R3/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
IL_9NJV_151 | 1/R3/774:778, 1/R3/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_9NJV_152 | 1/R3/779:783, 1/R3/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
IL_9NJV_153 | 1/R3/887:894, 1/R3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
IL_9NJV_154 | 1/R3/922:923, 1/R3/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
IL_9NJV_155 | 1/R3/925:927, 1/R3/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
IL_9NJV_156 | 1/R3/933:935, 1/R3/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
IL_9NJV_157 | 1/R3/953:954, 1/R3/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
IL_9NJV_158 | 1/R3/993:997, 1/R3/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
IL_9NJV_159 | 1/R3/1048:1050, 1/R3/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
IL_9NJV_160 | 1/R3/1052:1056, 1/R3/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
IL_9NJV_161 | 1/R3/1057:1058, 1/R3/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
IL_9NJV_162 | 1/R3/1060:1061, 1/R3/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
IL_9NJV_163 | 1/R3/1061:1063, 1/R3/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
IL_9NJV_164 | 1/R3/1124:1128, 1/R3/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
IL_9NJV_165 | 1/R3/1128:1134, 1/R3/1140:1144 | No text annotation | ||
IL_9NJV_166 | 1/R3/1158:1161, 1/R3/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
IL_9NJV_167 | 1/R3/1247:1253, 1/R3/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_9NJV_168 | 1/R3/1255:1258, 1/R3/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
IL_9NJV_169 | 1/R3/1259:1263, 1/R3/1272:1276 | Triple sheared | geometric IL_4V9F_085 IL_17948.2 | |
IL_9NJV_170 | 1/R3/1303:1308, 1/R3/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
IL_9NJV_171 | 1/R3/1399:1401, 1/R3/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
IL_9NJV_172 | 1/R3/1401:1404, 1/R3/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
IL_9NJV_173 | 1/R3/1405:1407, 1/R3/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
IL_9NJV_174 | 1/R3/1407:1409, 1/R3/1491:1494 | No text annotation | geometric IL_7D7V_003 IL_57744.1 | |
IL_9NJV_175 | 1/R3/1412:1414, 1/R3/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_9NJV_176 | 1/R3/1416:1419, 1/R3/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
IL_9NJV_177 | 1/R3/1430:1435, 1/R3/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_9NJV_179 | 1/R3/1440:1442, 1/R3/1460:1461 | Single bulged A | geometric IL_8VMA_003 IL_31462.6 | |
IL_9NJV_180 | 1/R3/1445:1448, 1/R3/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_9NJV_003 | Isolated cWH basepair | ||
IL_9NJV_085 | No text annotation | ||
IL_9NJV_112 | Isolated cWH basepair | ||
IL_9NJV_118 | Isolated cWH basepair | ||
IL_9NJV_178 | Isolated cWH basepair |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_9NJV_001 | 1/R1/30:31, 1/R1/474:484, 1/R1/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_9NJV_002 | 1/R1/32:35, 1/R1/445:461, 1/R1/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
J3_9NJV_003 | 1/R1/56:57, 1/R1/70:77, 1/R1/109:114 | No text annotation | ||
J3_9NJV_004 | 1/R1/296:301, 1/R1/316:325, 1/R1/337:342 | No text annotation | geometric J3_4V9F_015 J3_59706.1 | |
J3_9NJV_005 | 1/R1/683:690, 1/R1/772:775, 1/R1/791:794 | No text annotation | ||
J3_9NJV_006 | 1/R1/698:700, 1/R1/732:736, 1/R1/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
J3_9NJV_007 | 1/R1/1298:1303, 1/R1/1625:1627, 1/R1/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
J3_9NJV_008 | 1/R1/1306:1309, 1/R1/1605:1611, 1/R1/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
J3_9NJV_009 | 1/R1/1344:1349, 1/R1/1382:1385, 1/R1/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
J3_9NJV_010 | 1/R1/1424:1429, 1/R1/1564:1565, 1/R1/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
J3_9NJV_011 | 1/R1/2091:2093, 1/R1/2196:2200, 1/R1/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
J3_9NJV_012 | 1/R1/2282:2284, 1/R1/2384:2395, 1/R1/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
J3_9NJV_013 | 1/R1/2295:2299, 1/R1/2317:2323, 1/R1/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
J3_9NJV_014 | 1/R1/2517:2520, 1/R1/2545:2547, 1/R1/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
J3_9NJV_015 | 1/R1/2789:2791, 1/R1/2805:2806, 1/R1/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
J3_9NJV_016 | 1/R1/2812:2815, 1/R1/2831:2836, 1/R1/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
J3_9NJV_017 | 1/R2/10:16, 1/R2/68:70, 1/R2/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
J3_9NJV_018 | 1/R3/46:47, 1/R3/361:367, 1/R3/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
J3_9NJV_019 | 1/R3/46:52, 1/R3/359:367, 1/R3/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
J3_9NJV_020 | 1/R3/586:588, 1/R3/651:654, 1/R3/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
J3_9NJV_021 | 1/R3/586:588, 1/R3/651:655, 1/R3/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_9NJV_022 | 1/R3/672:673, 1/R3/717:725, 1/R3/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
J3_9NJV_023 | 1/R3/826:829, 1/R3/857:861, 1/R3/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
J3_9NJV_024 | 1/R3/936:939, 1/R3/1344:1350, 1/R3/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
J3_9NJV_025 | 1/R3/943:946, 1/R3/1235:1237, 1/R3/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
J3_9NJV_026 | 1/R3/955:963, 1/R3/972:984, 1/R3/1221:1225 | No text annotation | ||
J3_9NJV_027 | 1/R3/989:993, 1/R3/1045:1047, 1/R3/1210:1216 | No text annotation | ||
J3_9NJV_028 | 1/R3/989:997, 1/R3/1044:1047, 1/R3/1210:1216 | No text annotation | ||
J3_9NJV_029 | 1/R3/998:1009, 1/R3/1020:1027, 1/R3/1034:1043 | No text annotation | ||
J3_9NJV_030 | 1/R3/1063:1068, 1/R3/1107:1113, 1/R3/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
J3_9NJV_031 | 1/R3/1073:1074, 1/R3/1083:1087, 1/R3/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
J3_9NJV_032 | 1/R3/1116:1118, 1/R3/1155:1158, 1/R3/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
J3_9NJV_033 | 1/R3/1116:1118, 1/R3/1155:1161, 1/R3/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
J3_9NJV_034 | 1/R3/1237:1241, 1/R3/1296:1303, 1/R3/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
J4_9NJV_001 | 1/R1/47:54, 1/R1/116:121, 1/R1/130:153, 1/R1/172:178 | No text annotation | ||
J4_9NJV_002 | 1/R1/268:269, 1/R1/370:375, 1/R1/399:406, 1/R1/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
J4_9NJV_003 | 1/R1/601:604, 1/R1/624:628, 1/R1/635:638, 1/R1/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_9NJV_004 | 1/R1/1270:1276, 1/R1/1294:1295, 1/R1/1645:1648, 1/R1/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
J4_9NJV_005 | 1/R1/1310:1314, 1/R1/1338:1343, 1/R1/1404:1405, 1/R1/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
J4_9NJV_006 | 1/R1/1444:1445, 1/R1/1466:1467, 1/R1/1525:1526, 1/R1/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
J4_9NJV_007 | 1/R1/1772:1776, 1/R1/1788:1792, 1/R1/1827:1830, 1/R1/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_9NJV_008 | 1/R1/1833:1835, 1/R1/1905:1906, 1/R1/1924:1933, 1/R1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_9NJV_009 | 1/R1/2285:2289, 1/R1/2343:2347, 1/R1/2370:2372, 1/R1/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
J4_9NJV_010 | 1/R1/2643:2646, 1/R1/2674:2676, 1/R1/2731:2735, 1/R1/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
J4_9NJV_011 | 1/R3/115:122, 1/R3/239:240, 1/R3/286:289, 1/R3/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
J4_9NJV_012 | 1/R3/142:144, 1/R3/178:184, 1/R3/193:198, 1/R3/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
J4_9NJV_013 | 1/R3/575:577, 1/R3/764:769, 1/R3/810:821, 1/R3/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
J4_9NJV_014 | 1/T/6:9, 1/T/25:27, 1/T/43:49, 1/T/65:66 | tRNA junction | homologous J4_5E81_027 J4_70449.28 | |
J5_9NJV_001 | 1/R1/531:533, 1/R1/560:564, 1/R1/577:579, 1/R1/1261:1262, 1/R1/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
J5_9NJV_002 | 1/R1/584:589, 1/R1/668:671, 1/R1/809:812, 1/R1/1195:1196, 1/R1/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
J5_9NJV_003 | 1/R1/1674:1682, 1/R1/1706:1707, 1/R1/1751:1752, 1/R1/1756:1764, 1/R1/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
J5_9NJV_004 | 1/R1/2057:2064, 1/R1/2446:2454, 1/R1/2498:2507, 1/R1/2582:2588, 1/R1/2606:2611 | No text annotation | ||
J5_9NJV_005 | 1/R1/2074:2077, 1/R1/2243:2246, 1/R1/2258:2259, 1/R1/2281:2282, 1/R1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
J5_9NJV_006 | 1/R3/36:39, 1/R3/403:408, 1/R3/434:440, 1/R3/497:500, 1/R3/545:548 | No text annotation | ||
J5_9NJV_007 | 1/R3/36:39, 1/R3/403:408, 1/R3/434:442, 1/R3/492:500, 1/R3/545:548 | No text annotation | ||
J5_9NJV_008 | 1/R3/56:61, 1/R3/106:113, 1/R3/314:316, 1/R3/337:339, 1/R3/350:356 | No text annotation | ||
J6_9NJV_001 | 1/R1/45:46, 1/R1/179:183, 1/R1/214:224, 1/R1/231:235, 1/R1/262:266, 1/R1/426:433 | No text annotation | ||
J6_9NJV_002 | 1/R1/2074:2077, 1/R1/2243:2246, 1/R1/2258:2259, 1/R1/2281:2284, 1/R1/2384:2395, 1/R1/2421:2435 | No text annotation | ||
J7_9NJV_001 | 1/R1/8:15, 1/R1/525:531, 1/R1/2018:2023, 1/R1/2040:2043, 1/R1/2625:2630, 1/R1/2788:2789, 1/R1/2894:2895 | No text annotation | ||
J7_9NJV_002 | 1/R1/817:822, 1/R1/835:838, 1/R1/940:946, 1/R1/971:976, 1/R1/987:991, 1/R1/1163:1164, 1/R1/1185:1190 | No text annotation |
Problematic loops
No problematic loops
Coloring options: