HL_9NJV_025

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_025 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1799

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|G|978
9NJV|1|R1|A|979
9NJV|1|R1|A|980
9NJV|1|R1|A|981
9NJV|1|R1|C|982
9NJV|1|R1|A|983
9NJV|1|R1|A|984
9NJV|1|R1|C|985

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 21

Large ribosomal subunit protein bL21