HL_9NJV_027

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUUAU

Length

6 nucleotides

Bulged bases

9NJV|1|R1|U|1173, 9NJV|1|R1|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_027 not in the Motif Atlas

Homologous match to HL_4WF9_030

Geometric discrepancy: 0.5365

The information below is about HL_4WF9_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|G|1171
9NJV|1|R1|C|1172
9NJV|1|R1|U|1173
9NJV|1|R1|U|1174
9NJV|1|R1|A|1175
9NJV|1|R1|U|1176

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15