HL_9NJV_032

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9NJV|1|R1|U|1396, 9NJV|1|R1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_032 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1511

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|G|1389
9NJV|1|R1|U|1390
9NJV|1|R1|U|1391
9NJV|1|R1|A|1392
9NJV|1|R1|A|1393
9NJV|1|R1|U|1394
9NJV|1|R1|A|1395
9NJV|1|R1|U|1396
9NJV|1|R1|U|1397
9NJV|1|R1|C|1398

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23