HL_9NJV_035

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9NJV|1|R1|A|1535, 9NJV|1|R1|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_035 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.5462

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NJV|1|R1|C|1533
9NJV|1|R1|U|1534
9NJV|1|R1|A|1535
9NJV|1|R1|C|1536
9NJV|1|R1|G|1537
9NJV|1|R1|G|1538

Current chains

Chain R1

23S ribosomal RNA

Nearby chains