HL_9NJV_039

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9NJV|1|R1|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_039 not in the Motif Atlas

Homologous match to HL_5J7L_175

Geometric discrepancy: 0.1026

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9NJV|1|R1|C|1691
9NJV|1|R1|U|1692
9NJV|1|R1|U|1693
9NJV|1|R1|C|1694
9NJV|1|R1|G|1695
9NJV|1|R1|G|1696

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA