HL_9NJV_069

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

9NJV|1|R3|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_069 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0925

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9NJV|1|R3|U|12
9NJV|1|R3|U|13
9NJV|1|R3|U|14
9NJV|1|R3|G|15
9NJV|1|R3|A|16
9NJV|1|R3|U|17
9NJV|1|R3|C|18
9NJV|1|R3|A|19
9NJV|1|R3|U|20
9NJV|1|R3|G|21
9NJV|1|R3|G|22

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain se

Small ribosomal subunit protein uS5

Chain sl

Small ribosomal subunit protein uS12