HL_9NJV_082

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9NJV|1|R3|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_082 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1416

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9NJV|1|R3|G|617
9NJV|1|R3|C|618
9NJV|1|R3|U|619
9NJV|1|R3|C|620
9NJV|1|R3|A|621
9NJV|1|R3|A|622
9NJV|1|R3|C|623

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sp

Small ribosomal subunit protein bS16