HL_9NJV_098

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9NJV|1|R3|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1896

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9NJV|1|R3|G|1356
9NJV|1|R3|A|1357
9NJV|1|R3|U|1358
9NJV|1|R3|C|1359
9NJV|1|R3|A|1360
9NJV|1|R3|G|1361
9NJV|1|R3|A|1362
9NJV|1|R3|A|1363
9NJV|1|R3|U|1364
9NJV|1|R3|G|1365
9NJV|1|R3|C|1366

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14