HL_9NJV_101
3D structure
- PDB id
- 9NJV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex (bL33 absent)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9NJV|1|T|C|15, 9NJV|1|T|C|16, 9NJV|1|T|U|17, 9NJV|1|T|G|18, 9NJV|1|T|G|19, 9NJV|1|T|H2U|20, 9NJV|1|T|A|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NJV_101 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.158
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9NJV|1|T|C|12
9NJV|1|T|A|13
9NJV|1|T|G|14
9NJV|1|T|C|15
9NJV|1|T|C|16
9NJV|1|T|U|17
9NJV|1|T|G|18
9NJV|1|T|G|19
9NJV|1|T|H2U|20
9NJV|1|T|A|21
9NJV|1|T|G|22
Current chains
- Chain T
- tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L5
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: