HL_9NJV_103

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(MUM)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MUM, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_103 not in the Motif Atlas

Homologous match to HL_3WQY_003

Geometric discrepancy: 0.2136

The information below is about HL_3WQY_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9NJV|1|T|G|53
9NJV|1|T|MUM|54
9NJV|1|T|PSU|55
9NJV|1|T|C|56
9NJV|1|T|A|57
9NJV|1|T|A|58
9NJV|1|T|A|59
9NJV|1|T|U|60
9NJV|1|T|C|61

Current chains

Chain T

tRNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 5

50S ribosomal protein L5

Chain R1

Large subunit ribosomal RNA; LSU rRNA